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Query: 1e69_A mol:protein length:322 CHROMOSOME SEGREGATION SMC PROTEIN, from PDB0312

Results of FFAS03 search in PDB0312
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRLKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEKILEVGSLast
1 -152.0001e69_A mol:protein length:322 CHROMOSOME SEGREGATION SMC PROTEIN  ali model  100  1MRLKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEKILEVGS 316
2 -94.8001w1w_A mol:protein length:430 STRUCTURAL MAINTENANCE OF CHROMOSOME 1  ali model follow..  28  2GRLVGLELSNFKSYRGVTKVGFESNFTSIIGPNGSGKSNMMDAISFVLGVRS-NHLRSNILKDLIYRGVLNDENSDDYDVKAFYQKGNKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELLAGGNASLT-IEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPLQFIVISLKNTMFEKSDALVGVYRQENSSKIITLDLSNYAE... 430
3 -71.4003kta_B mol:protein length:173 Chromosome segregation protein smc  ali model follow..  36  1..........................................................................................................................................................MEKEKKNVFMRTFEAISRNFSEIFAKLSPGGSARLI-LENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMRDGVSKVVSLSLEKAMKILE 161
4 -62.0001xew_X mol:protein length:182 SMC protein  ali model follow..  40  2PYIEKLELKGFKSYGNKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGYNIVLQGDITKFIKMSPLERRLLIDDISGIAEYDSKKEKALEE............................................................................................................................................... 182
5 -54.6003aux_A mol:protein length:371 DNA double-strand break repair rad50 ATPase  ali model follow..  24  3MILKEIRMNNFKSHVN-SRIKFEKGIVAIIGENGSGKSSIFEAVFFALFGAG----SNFNYDTIITKGKKS------VYVELDFEVNGNNYKIIREYDSGRNGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLLNYKEESLKARLKEMSNLEKEKEKLTKHAPNGVLTIDNLSGGEQIAVALSLRLAIANANRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVKKDGNVSKV............. 367
6 -45.5003qku_A mol:protein length:359 DNA double-strand break repair rad50 ATPase  ali model follow..  20  1MKLERVTVKNFRSHSD-TVVEFKEGINLIIGQNGSGKSSLLDAILVGL--YWPLRIKDIKKDEFTKVGARD------TYIDLIFEKDGTKYRITRRFLKGYSSKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVVREVNLDKFETAYKKLSELKKTINNRIKEY--GGSGGIKDLEKAKDFTEELIEKVKKYKALKERPLTFLSGGERIALGLAFRLAMSLYGEISLLILDEPTPYLDEERRRKLITIMERYLKKPQVILVSHDEELKDAADHVIRISLENGSSKVEVVS......... 359
7 -44.2003qkt_A mol:protein length:339 DNA double-strand break repair rad50 ATPase  ali model follow..  19  1MKLERVTVKNFRSHSD-TVVEFKEGINLIIGQNGSGKSSLLDAILVGL--YWPLRIKDIKKDEFTKVGARD------TYIDLIFEKDGTKYRITRRFLKGYSSKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREASKIGELASEIFAEFTEGKYSELTFLSGGERIALGLAFRLAMSLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKPQVILVSHDEELKDAADHVIRISLENGSSEVVS........... 339
8 -39.7003qkr_B mol:protein length:179 DNA double-strand break repair rad50 ATPase  ali model follow..  19  3...............................................................................................................................KENRERVKKEIKDLEKAKDFTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVV-----RAEENKVRLFVVWEGKE-RPLTFLSGGERIALGLAFRLAMYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKPQVILVSHDEELKDAADHVIRISLENGSSKVEVVS......... 179
9 -29.1003tho_A mol:protein length:382 Probable DNA double-strand break repair Rad50  ali model follow..  21  12MRPERLTVRNFLGLKN-VDIEFQSGITVVEGPNGAGKSSLFEAISFAL-----NGIRYPNSYDYVNRNAVDGT----ARLVFQFERGGKRYEIIREINALQRKHNAKLSEILENGKVEKILGIEHRTFIRTVFLPQGEIDKLLISPPSEITEIISDVFQSKETLEKLEKLLKETGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGGIKDWGIERPARGLSGGERALISISLAMSLAEVGRLDAFFIDEGFSSLCTENKEKIASVLKELERLNKVIFITCDREFSEAFDRKLRITGGVVVNE.............. 376
10 -28.0003qkr_A mol:protein length:203 DNA double-strand break repair rad50 ATPase  ali model follow..  18  1MKLERVTVKNFRSHSD-TVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPL--RIKDIKKDEFTKVGARD------TYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFIYIRQGQIDAILES-DEAREKVVREVLNLDKFETAYKKLSELKKTINNRI....................................................................................................................................... 184
11 -24.2001qhl_A mol:protein length:227 PROTEIN (CELL DIVISION PROTEIN MUKB)  ali model follow..  15  5GKFRSLTLINWNGFFART-FDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYNSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPT................................................................................................................................................................................................ 133
12 -23.1003euj_A mol:protein length:483 Chromosome partition protein mukB, Linker  ali model follow..  14  8.KFRSLTLINWNGFFART-FDFDELVTTLSGGNGAGKSTTMAGFVTALPDLTLLNFRNKSLRDYLLPENSGVRQAFQDMEAALRENSGGSGGSISAESVANILRKTIQREQNRILQLNQGLQNIAFGQVKGVRLRDTHSILLNALSDQHEQHKDLFESQKLSFSEALAMLYKRINPHIELGQRMPQTIGEELLDYRNYLDLEVETLRGAYGWMRAESSALEAIGTGMSILLMVVQSWEILPCRLLFLDQA-ARLDAMSINTLFELCERLD---QLLIAA..................................... 449
13 -16.6002o5v_A mol:protein length:359 DNA replication and repair protein recF  ali model follow..  18  4VRLSALSTLNYRNL-APGTLNFPEGVTGIYGENGAGKTNLLEAAYLA----LTGQTDAPRIEQLIQAGETEQQGGSLSIQEVGLGRGRRQLKVDGVRARTGEDSELVFGPPSGRRALSRLSARYGEQLSRYERTVSQRNAALRGGEEWAMHVWDDVLKLGTEIMLFRRRALTRLDELAREANAQSRKTLALTLTESTSPETYAADLRGRRAEELARGSTVTGGEGRTVALALRRAELELGEDPVLLLDDFTAELDP---HRRQYLLDLAASVPQAIV------TGTELAPGAALTLRAQAGRFTPVADEEMQAEGT 358
14 -14.9002ghi_A mol:protein length:260 transport protein  ali model follow..  17  33...........HRTLKSINFFIPSGTTALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKY--------------------------------------NRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQ------------------------------------------LYDFIEALPKKWDTIVGNKGMK------LSGGERQRIAIARCL----LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIIGKIVEKGTHKDL............ 240
15 -14.2001mv5_A mol:protein length:243 Multidrug resistance ABC transporter ATP-bind  ali model follow..  17  15...........EQILRDISFEAQPNIIAFAGPSGGGKSTIFSLLRFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDED-----------------LWQVLDLAFARSFVEN--------------------------------------------------------------MPDQLNTEVGERGVK------ISGGQRQRLAIARAF----LRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYGQITGSGKHNEL............ 224
16 -14.1002d2e_A mol:protein length:250 SufC protein  ali model follow..  19  4LEIRDLWASDGETILKGVNLVVPKGVHALMGPNGAGKSTLGKI---LAGDPEYTVERG----EILLDG--------------------ENILELSPDERARKGLFLAFQYPVEVPGVT-----------------------------------------IANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNE--------------FSGGEKKRNEILQLLVL----EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFALVITHYQRILNQPDKVHGRVVATGGPELA............ 231
17 -13.7002zu0_C mol:protein length:267 Probable ATP-dependent transporter sufC  ali model follow..  20  16LSIKDLHVSEDKAILRGLSLDVHPGVHAIMGPNGSGKSTLS---ATLAGREDYEVTGG----TVEFKG--------------------KDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQ-------------------FFLQTALNAVRSYRGQETLDRFDFQDLMEE------------------KIALLKMPEDLLTRSVNV--------------FSGGEKKRNDILQMAVL----EPELCILDESDSGLDIDALKVVADGVNSLRDGKRFIIVTHYQRILDKPDYVHGRIVKSGDFTLV............ 247
18 -13.4002ff7_A mol:protein length:247 Alpha-hemolysin translocation ATP-binding pro  ali model follow..  17  16...........PVILDNINLSIKQGVIGIVGRSGSGKSTLTKLIRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK------------------VIYAAKLAGAHDFISE--------------------------------------------------------------LREGYNTIVGEQGAG------LSGGQRQRIAIARAL----VNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIGKIVEQGKHKEL............ 224
19 -13.4003nh6_A mol:protein length:306 ATP-binding cassette sub-family B member 6, m  ali model follow..  21  61...........RETLQDVSFTVMPGQTALVGPSGAGKSTILRLLRFYDISSGCIRIDGQDISQV--------------------------------------TQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAG------------------------------------------IHDAIMAFPEGYRTQVGERGLK------LSGGEKQRVAIARTI----LKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILGCIVERGRHEAL............ 269
20 -12.7001l7v_C mol:protein length:249 Vitamin B12 transport ATP-binding protein btu  ali model follow..  16  4..VMQLQDVAESTRLGPLSGEVRAGILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------------------------------------------------------------------------------------------RSTNQLSGGEWQRVRLAAVVLQITPQANPLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGG................. 209
21 -12.3002ihy_A mol:protein length:279 ABC transporter, ATP-binding protein  ali model follow..  16  16IQLDQIGRMQGKTILKKISWQIAKGKWILYGLNGAGKTTLLNILNAYEPATSGTNLFGKMPGKVGYSAETVRQHIG--------------------------------------------------------FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV--------------------------GMSAKAQQYIGYLSTGEKQRVMIARAL----MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPMIYVTHFIEEITAN-----LLLKDG................. 233
22 -11.8002pjz_A mol:protein length:263 Hypothetical protein ST1066  ali model follow..  18  2IQLKNVGIT--RFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKI----------------------------------------------RNYIRYSTNLPEAYEIGVTVNDIVY-----------------------------------------------------EELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALA----SQPEIVGLDEPFENVDAARRHVISRYIKEYG--KEGILVTHELDMLNLYKEYKAYFLVGN................. 202
23 -11.8003gd7_A mol:protein length:390 Fusion complex of Cystic fibrosis transmembra  ali model follow..  15  37..............LENISFSISPGRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSI----------------------------------------------------------TLEQWRKAFGVIPQKV---------------IFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCV---------------LSHGHKQLMCLARSV----LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQF--LVIEEN................. 229
24 -11.7001jj7_A mol:protein length:260 PEPTIDE TRANSPORTER TAP1  ali model follow..  23  42......................PGEVTALVGPNGSGKSTVAALLNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE-----------------ITAAAVKSGAHSFISG--------------------------------------------------------------LPQGYDTEVDEAGSQ------LSGGQRQAVALARAL----IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSVLLITQHLSLVEQADHILGAIREGGTHQQL............ 241
25 -11.6002ixe_A mol:protein length:271 ANTIGEN PEPTIDE TRANSPORTER 1  ali model follow..  23  44......................PGKVTALVGPNGSGKSTVAALLNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE-----------------ITAVAMESGAHDFISG--------------------------------------------------------------FPQGYDTEVGETGNQ------LSGGQRQAVALARAL----IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWATVLLITQQLSLAERAHHILGSVCEQGTHLQL............ 243
26 -11.5003b5x_A mol:protein length:582 Lipid A export ATP-binding/permease protein m  ali model follow..  23  356...........KPALSHVSFSIPQGTVALVGRSGSGKSTIANLFRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQ-----------------IEQAARQAHAMEFIEN--------------------------------------------------------------MPQGLDTVIGENGTS------LSGGQRQRVAIARAL----LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEI--LVVDEG................. 554
27 -11.1003b5w_A mol:protein length:582 Lipid A export ATP-binding/permease protein m  ali model follow..  24  356...........VPALRNINLKIPAGTVALVGRSGSGKSTIASLIRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQ-----------------IEEAARMAYAMDFINK--------------------------------------------------------------MDNGLDTVIGENGVL------LSGGQRQRIAIARAL----LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEI--VVVEDG................. 554
28 -11.0003b5y_A mol:protein length:582 Lipid A export ATP-binding/permease protein m  ali model follow..  24  356...........VPALRNINLKIPAGTVALVGRSGSGKSTIASLIRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQ-----------------IEEAARMAYAMDFINK--------------------------------------------------------------MDNGLDTIIGENGVL------LSGGQRQRIAIARAL----LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEI--VVVEDG................. 554
29 -10.9001sgw_A mol:protein length:214 putative ABC transporter  ali model follow..  19  5LEIRDLSVGYDKPVLERITMTIEKGVVNFHGPNGIGKTTLLKTISTYLKPLKGE---------IIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVAS----LYGVKVNKNEIMDALESVEVLDLK------------------------------------------------------------------------------------KKLGELSQGTIRRVQLASTL----LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNKYSTKIDK................. 206
30 -10.9002nq2_C mol:protein length:253 Hypothetical ABC transporter ATP-binding prot  ali model follow..  15  11....GFYYQAENFLFQQLNFDLNKGILAVLGQNGCGKSTLLDLLLGIHRPIQ------------------------------------GKIEVYQSI----------------------------------GFVPQF------FSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALD----------------------YLNLTHLAKREFTSLSGGQRQLILIARAIA----SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQTVVFTTHKTLLLNKQNFKFGILTSENLTALFHLPMF....... 230
31 -10.4004aa3_A mol:protein length:619 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10,  ali model follow..  19  392...............QDFSLSIPSGVTALVGPSGSGKSTVLSLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEE---------------IQRVAEVANAVAFIRN--------------------------------------------------------------FPQGFNTVVGEKGVL------LSGGQKQRIAIARAL----LKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAGKITEYGKHEEL............ 599
32 -10.4002yl4_A mol:protein length:595 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10,  ali model follow..  19  361...............QDFSLSIPSGVTALVGPSGSGKSTVLSLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEE---------------IQRVAEVANAVAFIRN--------------------------------------------------------------FPQGFNTVVGEKGVL------LSGGQKQRIAIARAL----LKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAGKITEYGKHEEL............ 568
33 -10.4001g6h_A mol:protein length:257 HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANS  ali model follow..  19  14....VKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR---------VYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMT--------------------------------------------VLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE----------------------FLKLSHLYDRKAGELSGGQMKLVEIGRALMT----NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKITFLIIEHRDIVLNYIDHLNGQIIAEGRGEEEIKNVLSDPKVVE 252
34 -10.2001xmi_A mol:protein length:291 Cystic fibrosis transmembrane conductance reg  ali model follow..  19  50..........GTPVLKDINFKIERGLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIFSWIMPGT--------IKENIIAGVSYDEYRYRSVIKACQ------------------------------------------------------------------------------------------LEEDISKFAEKDNIVLGEGGIT------LSGGQRARISLARAV----YKDADLYLLDSPFGYLDLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI--LILHEG................. 235
35 -10.2002bbo_A mol:protein length:291 Cystic fibrosis transmembrane conductance reg  ali model follow..  19  50..........GTPVLKDINFKIERGLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIFSWIMPGT--------IKENIIFGVSYDEYRYRSVIKACQ------------------------------------------------------------------------------------------LEEDISKFAEKDNIVLGEGGIT------LSEGQQAKISLARAV----YKDADLYLLDSPFGYLDLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI--LILHEG................. 235
36 -10.2001q3h_A mol:protein length:286 Cystic fibrosis transmembrane conductance reg  ali model follow..  20  67..........................LAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVFSWIMPGT--------IKENIIFGVSYDEYRYKSVVKACQ------------------------------------------------------------------------------------------LQQDITKFAEQDNTVLGEGGVT------LSGGQRARISLARAV----YKDADLYLLDSPFGYLDFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKI--LILHQG................. 235
37 -10.1003g5u_A mol:protein length:1284 Multidrug resistance protein 1a  ali model follow..  17 1047............PVLQGLSLEVKKGTLALVGSSGCGKSTVVQLLRFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE----------------IVRAAKEANIHQFIDS--------------------------------------------------------------LPDKYNTRVGDKGTQ------LSGGQKQRIAIARAL----VRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVGKVKEHGTQQLLAQK......... 1260
38 -10.0001yqt_A mol:protein length:538 RNase l inhibitor  ali model follow..  19  12SHMEQLEEDGVNAFVLYRLPVVKEGVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----------------------------------------------------------DETGKLEEVVKAL--------------------------ELENVLEREIQHLSGGELQRVAIAAALLR----NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKVLVVEHDLAVLDLSDIIHVVYGEPGVYGIFSQP......... 238
39 -9.9802hyd_A mol:protein length:578 ABC transporter homolog  ali model follow..  21  354...........APILKDINLSIEKGTVAFVGMSGGGKSTLINLIRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEE------------------VVEAAKMANAHDFIMN--------------------------------------------------------------LPQGYDTEVGERGVK------LSGGQKQRLSIARIF----LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKI--VVIENG................. 551
40 -9.9402pzg_A mol:protein length:241 Cystic fibrosis transmembrane conductance reg  ali model follow..  21  45......................RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIFSWIMPGT--------IKENIIFGVSYDEYRYRSVIKACQ------------------------------------------------------------------------------------------LEEDISKFAEKDNIVLGEGGIT------LSGGQRARISLARAV----YKDADLYLLDSPFGYLDLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI--LILHEG................. 217
41 -9.8403ozx_A mol:protein length:538 RNase L inhibitor  ali model follow..  18  8....RYKVNGFKLF--GLPTPKNNTILGVLGKNGVGKTTVLKILAGEIKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKI--------------------------------------------------------------------DERGKKDEVKELL--------------------------NMTNLWNKDANILSGGGLQRLLVAASLL----READVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTIIYGESSVYG................. 218
42 -9.8403bk7_A mol:protein length:607 ABC transporter ATP-binding protein  ali model follow..  22  102.........GVNAFVLYRLPIVKDGVVGIVGPNGTGKTTAV---KILAGQLIPNLCEDNDSWDNVIRAFRGNE------------QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQ----------------------------------------------------------------------LSGGELQRVAIAAALLR----KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKVLVVEHDLAVLDLSDVIHVVYGEPGVYGIFS........... 312
43 -9.8402yz2_A mol:protein length:266 Putative ABC transporter ATP-binding protein  ali model follow..  15  20...........KKALENVSLVINEGCLLVAGNTGSGKSTLLQIVAGLIEPTSGD---------VLYDGERKKGYEIRRNIGIAFQYPEDQF----------------------------------------------------------------------------------FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH----EPDILILDEPLVGLDREGKTDLLRIVEKWKTLKTVILISHDETVINHVDRVVGKKVFDGTRMEFLEKYDPRF.... 233
44 -9.7903gfo_A mol:protein length:275 Cobalt import ATP-binding protein cbiO 1  ali model follow..  20  24..............LKGINMNIKRGVTAILGGNGVGKSTLFQNFNGILKPSSGRIL----FDNKPIDYSRKGIMKLRESIGIVFQDPDNQL--------------------------------------------------------FSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRT--------------------------GIEHLKDKPTHCLSFGQKKRVAIAGVLVM----EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELTIIIATHDDIVPLYCDNVFGRVILQGNPKEVFAEKEVIRKVN. 242
45 -9.6302iw3_A mol:protein length:986 ELONGATION FACTOR 3A  ali model follow..  18  430LCNCEFSLAGAKILLNKTQLRLKRA-YGICGPNGCGKSTL---MRAIANGQVDGFPTQEEC--------------------------------------------------------------------RTVYVEHDIDGT------------HSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISA-------------------------LSGGWKMKLALARAV----LRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISHDSVFLDVCEYII--NYEGLKLRKYKGNFTEFVK... 629
46 -9.6202bbs_A mol:protein length:290 Cystic fibrosis transmembrane conductance reg  ali model follow..  18  50..........GTPVLKDINFKIERGLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRINSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDI---------------------------------------------------------------------------------------------------SKFAEKDNIVLGEGGIT------LSGGQRARISLARAV----YKDADLYLLDSPFGYLDLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI--LILHEG................. 234
47 -9.6102pcj_A mol:protein length:224 Lipoprotein-releasing system ATP-binding prot  ali model follow..  18  29......................KGEFVSIIGASGSGKSTLLY----ILG-----------------------------------------------LDAPTEGKVFLEGKEVD-----------YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK--------------------ERGEYLLSELGLGDKLSRKPYE----LSGGEQQRVAIARAL----ANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTIVMVTHERELAELTHRT--LEMKDG................. 215
48 -9.1501b0u_A mol:protein length:262 HISTIDINE PERMEASE  ali model follow..  17  14...........KRYGGHEVLK-AGDVISIIGSSGSGKSTFLRCI---------NFLEKPSEGAIIVNGQNINLVRDKDG----------------------------QLKVADKNQLRLLRTRLTMVFQHFNLW------------SHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV----------IDERAQGK------------------VHLSGGQQQRVSIARALAM----EPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKMVVVTHEMGARHVSSHVIGKIEEEGDPEQV............ 240
49 -9.1503j16_B mol:protein length:608 Rli1p  ali model follow..  18  88.........SANSFKLHRLPTPRPGVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM---------------------------------------------LEDDIKAIIKPQYVDNIPRA------IKGPVQKVGELLKLRMEKSPEDVKRYIKIL--------------------------QLENVLKRDIEKLSGGELQRFAIGMSCVQ----EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKVICVEHDLSVLDLSDFV--CIIYGV................. 297
50 -9.0602cbz_A mol:protein length:237 MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1  ali model follow..  21  30......................EGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVQAWIQNDS--------LRENILFGCQLEEPYYRSVIQACA------------------------------------------------------------------------------------------LLPDLEILPSGDRTEIGEKGVN------LSGGQKQRVSLARAV----YSNADIYLFDDPLSAVDAHVGKHIFENVKGMLKNKTRILVTHSMSYLPQVDVI--IVMSGG................. 204
51 -9.0202onk_A mol:protein length:240 Molybdate/tungstate ABC transporter, ATP-bind  ali model follow..  20  1MFLKVRAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVF---LELIAG------IVKPDRGEVRLNGAD------------------------------------ITPLPPERRGIGFVPQDYALFPH----------------------LSVYRNIAYGLRNVERVERDRRVREMAEKL--------------------------GIAHLLDRKPARLSGGERQRVALARAL----VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREVPILHVTHLIEAAMLADEV--AVMLNG................. 203
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.