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Query: sp|A0PJY2|FEZF1_HUMAN Fez family zinc finger protein 1 OS=Homo sapiens GN=FEZF1 PE=2 SV=1 (Range: 106-243), from NEW_HUMAN_DOMAINS

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst PAAVPSAPAFSCSDLLNCALSLKGDLARDALPLQQYKLVRPRVVNHSSFHAMGALCYLNRGDGPCHPAAGVNIHPVASYFLSSPLHPQPKTYLAERNKLVVPAVEKYPSGVAFKDLSQAQLQHYMKESAQLLSEKIAFLast
1 -7.5003omd_A mol:protein length:145 Uncharacterized protein  ali model follow..  13  5..................GMDLTKQFPRSPVDRLGGMDHLKRVIDKARAHVAGTLTYNCPLDQAFFSFFGLDHEKFAEAVKSRPQDQDMLAWVHSQSPRSKNPKERSPDSPEKWDYFRSVRDSLAPGRTDITT..... 132
2 -7.4701gsk_A mol:protein length:513 SPORE COAT PROTEIN A  ali model follow..  12  169.................VGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFY--LVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDPRSVKLNSFSLAPAERYDIIIDFTAYEGESI.. 314
3 -6.3003lyp_A mol:protein length:215 Stringent starvation protein A  ali model follow..  12  27..............LAEKGVSAEIISVEAGRQPPKLIEVNPYTLVDRDLALWESTVVMEYLDERYPHPPLLPVYPVARANSRLLIHRIQRDWCGQVDLILDPRTKEAARVQARKELRESGVSPLFADKPFFLSEEQSL 156
4 -6.0002j28_S mol:protein length:110 50S RIBOSOMAL PROTEIN L22  ali model follow..  13  1...................METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAV----------LVKKVLESAIANAEHNDGAIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHIT...... 104
5 -5.8104yam_A mol:protein length:281 Beta-etherase  ali model follow..  11  60........................................P-VIVDDGEWVLDSWVIAEYLDEKYPDRPMLFEGPTQKNLYHDLSLPQDRDYVRWSREQWFLGGQRLEDVQAGREDRLPLFRRILAETKWLGGDQPNF 186
6 -5.7204wce_P mol:protein length:117 50S ribosomal protein L22  ali model follow..  11  1...................MEAKAVARTIRIAPRKVRLVLDLIRGKNAAEAIAILKLTNKASSP----------VIEKVLMSALANAEHNYDMTDELVVKEAYANEGPTLKRFRPRAQGRASAINKRTSHIT...... 104
7 -5.6203j3v_S mol:protein length:113 50S ribosomal protein L22  ali model follow..  12  1...................MQAKAVARTVRIAPRKARLVMDLIRGKQVGEAVSILNLTPRAASP----------IIEKVLKSAIANAEHNYEMANNLVISQAFVDEGPTLKRFRPRAMGRASQINKRTSHIT...... 104
8 -5.6102jvg_A mol:protein length:72 IgG-binding protein SBI  ali model follow..  20  20................................................................................ANDAISKLNEKDSIENRRLAQREVNKAPMDV--KEHLQKQLDALVAQKDA........ 67
9 -5.5701yy7_A mol:protein length:213 stringent starvation protein A  ali model follow..  10  29..............LAEKGVSVEIEQVEADNLPQDLIDLNPYTLVDRELTLYESRIIMEYLDERFPHPPLMPVYPVARGSSRLMMHRIEHDWYSLLYKIEQGNAQEAEAARKQLREELLSIAPVFNETPFFMSEEFSL 156
10 -5.5502wy7_Q mol:protein length:80 IGG-BINDING PROTEIN  ali model follow..  20  22................................................................................ANDAISKLNEKDSIENRRLAQREVNKAPMDV--KEHLQKQLDALVAQKDA........ 69

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics. 2001 Mar;17(3):282-3.