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Query: sp|A0PJX8|TMM82_HUMAN Transmembrane protein 82 OS=Homo sapiens GN=TMEM82 PE=2 SV=2 (Range: 97-285), from NEW_HUMAN_DOMAINS

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst LEFSLRAVSTLLSLGKGSQGAAERLQLYLLCQYSLGCGLTCGLSFLQEGAPHRTLNLLLSLGLATLLGLGARRLHRHVCRLYELHSSQRYCGVCLGLLAHAHGLPQLLGRALAIAFAVGDLAAVALINQDFLTTSEAMRFWTPLTICYTLLVIYMQEEQRQHPGLQSQVQTVLVRMGGLFVLLLTVGRWLast
1 -7.7801zu1_A mol:protein length:127 RNA binding protein ZFa  ali model follow..  35....................................CKV-CSAVL-YQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAESHY................................................................................. 113
2 -7.4504d5l_a mol:protein length:115 40S RIBOSOMAL PROTEIN US2  ali model follow..  13  17....................................................................................HVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFR................... 102
3 -7.3804kzx_a mol:protein length:115 40S ribosomal protein S26  ali model follow..  15  17....................................................................................HVQPIRCTNCACCVPKDKAIKKFVIRNIVEAAAVRDISEVSVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFR................... 102
4 -7.0403j7a_3 mol:protein length:107 40S ribosomal protein eS26  ali model follow..  14  17....................................................................................HVNPLRCSNCGRCVPKDKAIKRFNIRNIVDTSAQRDIKEASVYSTFQLPKLYIKQCYCVSCAIHSRFVRVRSREQRRV........................... 94
5 -6.9703j80_a mol:protein length:119 eS26  ali model follow..  14  17....................................................................................HVKPVRCVNCSRSVPKDKAIKRMAIRNIVEAAAIRDLSEASVYAEYALPKTYNKLHYCISCAIHARIVRVRSRTDRRI........................... 94
6 -6.9604uer_5 mol:protein length:97 ES26  ali model follow..  16  16....................................................................................HVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHARIVRVRSREDRK............................ 92
7 -6.9605I4L Entity 28(prereleased)  ali follow..  16  16....................................................................................HVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHARIVRVRSREDRK............................ 92
8 -6.9103bnv_A mol:protein length:152 Cj0977  ali model follow..  17  69.................................................................................................................FIFAAANYVAQASINKEFSVIIGSCFFYAPLKLGDVLEL---EAHALFDETSKKRDVKVVGHVKEIKMF....... 135
9 -6.7402a79_B mol:protein length:499 Potassium voltage-gated channel subfamily A m  ali model follow..  16  235FEFLVRFFAC--SKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLI-------FLFIGVILFSSAVYFAEADERDSQFPSIPDA--FWSMTTVGYGDMV----------TTIGGKIVGSLCAIAGVLTIALPV... 406
10 -6.5105D9G Entity 1(prereleased)  ali follow..  14  7.PWKLTASKTHIMKSADVEKLADELHMVLRIQHGSGFGIEFNATDALRCVNNYQGMLKVACAEEWQESRTEGEHSKEVIKPYDWTYTTDYKGTLLG------------------SLKLKVVPTTDHIDTEKLKAREQIKFFEEVLLFEDELVSSLSVKIRVMPSSFFLLLRFFLRIDGVLIRMNDT... 189

FFAS is supported by the NIH grant R01-GM087218-01
8 2 8 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.