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Query: sp|A0AVK6|E2F8_HUMAN Transcription factor E2F8 OS=Homo sapiens GN=E2F8 PE=1 SV=1 (Range: 470-543), from NEW_HUMAN_DOMAINS

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70
# Score Template Links and tools%idFirst KPVAPLDPPVNAEMELTAPSLIQPLGMVPLIPSPLSSAVPLILPQAPSGPSYAIYLQPTQAHQSVTPPQGLSPTLast
1 -7.7203pge_A mol:protein length:200 SUMO-modified proliferating cell nuclear anti  ali model follow..  18  152.....................IKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFLAPK............... 189
2 -6.8402fpq_A mol:protein length:444 BOTULINUM NEUROTOXIN D LIGHT CHAIN  ali model follow..  24  2.......................PLGSPEFMPVNDNDILYLRIPQNKLITTPVIWVIPER.............. 57
3 -6.5402j0q_I mol:protein length:150 PROTEIN CASC3  ali model follow..  43.......................................PAYIPRK------LFFEHDLRGQTQEE........ 64
4 -6.4201kmd_A mol:protein length:117 Vacuolar morphogenesis protein VAM7  ali model follow..  12  1.................................KMSEKLRIKVDDVKINPKYVLYGVSTPNKRLYKRYSEFW.. 39
5 -6.1802lgn_A mol:protein length:66 Lactococcin 972  ali model follow..  15  10...............................................VSSAYSNYHHGSKTHSATV........ 28
6 -5.8101u0r_A mol:protein length:307 Inorganic polyphosphate/ATP-NAD kinase  ali model follow..  27  192...................LVSTPTGSTAY---AFSAGGPVLWPDLE-----AILVVPNNAHALFGRPMVTSPE 238
7 -5.7502hti_A mol:protein length:185 BH0577 protein  ali model follow..  22  38.......................................PYVIPLNFVWHNHAIYFHGASE............. 59
8 -5.5305bqm_A mol:protein length:453 Botulinum neurotoxin type D  ali model follow..  20  13...............................PVNDNDILYLRIPQNKLITTPVIWVIPER.............. 49
9 -5.5102q88_A mol:protein length:257 Putative ABC transporter amino acid-binding p  ali model follow..  14  42.................AREIFKRLGVVVASISEYGAMIPGLQAGRHDAITAGLFMKPERCAAVAYSQPILC.. 98
10 -5.4404tx5_A mol:protein length:192 Diablo homolog, mitochondrial  ali model follow..  21  1.....................................AVPIAQKSEPHSLSSEALMRRAVSLVTDSTSTFLSQT 37

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.