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Query: tr|A0AVG2|A0AVG2_HUMAN TRPM8 protein OS=Homo sapiens GN=TRPM8 PE=2 SV=1 (Range: 311-360), from NEW_HUMAN_DOMAINS

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50
# Score Template Links and tools%idFirst TRAVELFTECYSSDEDLAEQLLVYSCEAWGGSNCLELAVEATDQHFIAQPLast
1 -6.4202kyu_A mol:protein length:67 Histone-lysine N-methyltransferase MLL  ali model follow..  28  10.....LCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDE.......... 44
2 -5.8303o7a_A mol:protein length:52 PHD finger protein 13 variant  ali model follow..  14  1..SWDLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ. 47
3 -5.7703o70_A mol:protein length:68 PHD finger protein 13  ali model follow..  15  12....GLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ. 56
4 -5.6101wee_A mol:protein length:72 PHD finger family protein  ali model follow..  21  21.........CGTKDDDGERMLACDGCGVWHHTRCIGINNADA........ 53
5 -5.4303j0g_M mol:protein length:59 E3 protein  ali model follow..  22  22.........CYDRKPAETLAMLSVNVDNPGYDELLEAAVKCPGRK..... 57
6 -4.7903kqi_A mol:protein length:75 PHD finger protein 2  ali model follow..  11  10....PVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVE............ 43
7 -4.7803n41_A mol:protein length:65 E3 envelope glycoprotein  ali model follow..  14  27.........CYEKEPEETLRMLEDNVMRPGYYQLLQASLTCSPH...... 61
8 -4.7701wep_A mol:protein length:79 PHF8  ali model follow..  13  12....PVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEE.......... 47
9 -4.6604l58_A mol:protein length:69 Histone-lysine N-methyltransferase MLL5  ali model follow..  11  14.............THDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCE. 49
10 -4.6401we9_A mol:protein length:64 PHD finger family protein  ali model follow..  17  7....GQCGACGESYAADEFWICCDLCEMWFHGKCVKIT............ 40

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics. 2001 Mar;17(3):282-3.