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15675966
Query: gi|15675966|ref|NP_273084.1|(removed signalp:1-27) pilin PilE (NMB0018) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst LPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPGNNTSAGVATSSEIKGKYVKSVEVKNGVVTAQMASSNVNNEIKGKKLSLWAKRQNGSVKWFCGQPVTRDKAKAANDDVTAAAAANGKKIDTKHLPSTCRDASDASLast
1 -36.800PF00114.14; Q60163_MORBO/35-157; Pilin (bacterial filament)  ali follow..  14  1........SKSQTTRVVGELAAGKTAVDAALFEGKEPVLQANNADTSKEMSNVELGGFSATSSAGTITGTL-GTRANKDITGAKIMQNRAADGV---WSCTID-----------------GSAATGWKDKFIPTGC....... 122
2 -14.400PF05307.6; Q9F5V1_ECOLX/1-97; Bundlin  ali follow..  20  34MFYYQSASDSNKSQNAISEVMSATSAINGLYIGQTSYTGLNSN.................................................................................................... 76
3 -7.890PF14245.1; B0C6G6_ACAM1/51-152; Type IV pilin PilA  ali follow..  11  2.......ANKARQSAAKSHIGAVNRAQQAYRLEERTFADDMGLLGIGLPLTTETYSFGTVNSTVAEFRATPTDPLLSAITGCTNANIVFGGLATTSVTLEEQP........................................ 99
4 -7.860PF08334.6; Q46WA2_CUPPJ/53-162; Type II secretion system (T2SS), protein G  ali follow..  14  1..KIMSRPDEARIVAARQDISSIMQALKLYRLDNSRYPTTEQG.................................................................................................... 41
5 -7.500PF09286.6; Q281W2_PHACH/35-176; Pro-kumamolisin, activation domain  ali follow..  14  42.ASYGEHLSKEEVEKFVAPTAQSSEAVNAWLEQVG............................................................................................................ 75
6 -7.140PF08969.6; Q3UZ62_MOUSE/6-113; Domain of unknown function (DUF1873 topsan)  ali follow..  22  68IKKRPDFLGPANIKKAIEEAERLSESLKLRY................................................................................................................ 108
7 -6.960PF04426.7; Q875T3_SACCA/685-968; Bul1 C terminus  ali follow..  10  247VPSFESYCVRVNIKFHHIGTVTIDVPIS................................................................................................................... 280
8 -6.870PF00535.21; Q19421_CAEEL/9-186; Glycosyl transferase family 2  ali follow..  10  4IPAKEKFLRET-LNGLLDQTACENSKIEICLADDGSVDDTVRILENARLEFEEMGMNVVVTHVPQPGGVGAAKDCAVRSSKGRYLCFNDADD................................................... 96
9 -6.650PF03235.9; Q8YLY8_NOSS1/10-160; Protein of unknown function DUF262 topsan  ali follow..  11  13VPKYQAFDEQEEIDDFIKDLLVLYNSRKINPNQPRK........................................................................................................... 50
10 -6.420PF00993.15; O19310_BOVIN/1-82; Class II histocompatibility antigen, alpha domain  ali follow..  15  43LPMFSQFAG--DPQAALSEIATAKHNLDVLTKRSNFTPVIN...................................................................................................... 82

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Rychlewski L, Godzik A. Secondary structure prediction using segment similarity. Protein Eng. 1997 Oct;10(10):1143-53.