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Query: gi|15675952|ref|NP_273070.1|(removed signalp:1-37) EpiH/GdmH-related protein (NMB0004) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VYRTGGQVLPPYVRADAALVLGAAAWDKRPSPVFRERINHAIALYQSRRVGKIVFTGGRTKKGYMTEAEVGRRYALKQGVPARNILFENTSRNTYENLNNIRPVLRANGIASVVIVSDPYHLARAAEMAEDLGVRVYMSATPTTRFDAGNKKKIFMLQEGYALSLYRLEKWGRDFFNLast
1 -37.900PF02698.15; D5CMM5_SIDLE/81-243; DUF218 topsan domain  ali follow..  30  1...............DAIVVLGGGT-GDTVSKETLERLRYAARLYRQTGKP-ILVTGGTPLGNDLSEAAQMKKTLEQENVPV--RWAEGASNNTLENARLSREVLKKEGISRIYLVTHAWHMPRAVQVFQAAGFQVYPAPT.................................... 131
2 -6.560PF00532.19; MALI_ECOLI/64-342; Periplasmic binding proteins and sugar binding domain of LacI family  ali follow..  14  84.................VIFASRASYLDDVDTVRPDNMQAAQLLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSDWVLECTSSQKQAAEAITALLRHNPTISAVVCYNETIAMGAWFGLLKAGRQS......................................... 206
3 -6.560PF05728.10; Q32BT7_SHIDS/4-188; Uncharacterised protein family (UPF0227 topsan)  ali follow..  1....................................................LLYLHGFNSSPRSAKASLLKNWLAEHH-PDVEMIIPQLPPYPSDAAELLESIVLEHGGDSLGIVGSSLGGYYATWLSQCFMLPA......................................... 83
4 -6.520PF13344.4; C5GX93_AJEDR/41-149; Haloacid dehalogenase-like hydrolase  ali follow..  16  4.............DIDGVLLRSSRPLPGA---------AESLQLLKKEKIPFVLLTNGGGMHETKRIAQLSERLHVA--LDADTII---QSHTPFADLVKGNKVQGALENKCVLIVGGG----ECRSVAQEYGFK.......................................... 109
5 -6.420PF04311.11; W6REB0_9RHIZ/75-346; Protein of unknown function (DUF459 topsan)  ali follow..  14  78.WPQQLTKFMDEAKPAMVIVLGAKFRTDGWYVEYQRRVVDFGKQVTSRKIPLLWVGLPAFDSPAMTADAVQLNQLFRKQMESVGGFVDIWDGFVSEGGEFIVTGSDINGQQVRLRTSDGINLTEA.................................................... 216
6 -6.350PF07454.9; C5D4U7_GEOSW/103-381; Stage II sporulation protein P (SpoIIP)  ali follow..  13  191...........VDYARVAFIIGGENAKYEKNLQLATQLHHLLQKKYPGLSRGIIEKKGAETNGKFNQDLSENAILIEFG----------GVDNTFEELFRSVSAVAD...................................................................... 276
7 -6.310PF13743.4; U5L7Y1_9BACI/27-219; Thioredoxin  ali follow..  10  85................SIAIKAAELQGRKAGIRFLRKLQEVLFL----------------EKQNISNFDVLKSCAQNVGLDVVEFVADIHSDSAAKAFQCDLKITSEMDVQTLVFFNEN.......................................................... 174
8 -6.200PF00156.25; Q6NF43_CORDI/11-164; Phosphoribosyl transferase domain  ali follow..  15NRELAQQIVDSNYTPDIIVAVARG--GLVPAGALSYSMGIKL-------SDAINVEFYTDVNETLPDPVLLEPLLDTNSIRGKKVLVVDDVADSGRTLDLVLKLLENHGVRSAVIYAKSRSIVAPNYIWKRTD............................................ 140
9 -6.200PF10686.7; A5VGC2_SPHWW/202-266; Protein of unknown function (DUF2493 topsan)  ali follow..  3.................VIFSGGQVWEDH--DLLYKGLD---RIKTRIPEMILATTAQAKGCDAIAH-----AWAASRGVKVIQFRLD......................................................................................... 63
10 -5.990PF14826.4; W1Q8U2_OGAPD/6-161; FACT complex subunit SPT16 N-terminal lobe domain  ali follow..  12  3..............................QSVFRKRLHLLQRNIANSIAGLLIAVGSSDDTNPYQKSTVLHTWLLGYEFPATLIFITGKKVTVLTSVGKSKYLEPLKSSSVNLNI............................................................. 93

FFAS is supported by the NIH grant R01-GM087218-01
8 3 0 1 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.