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Query: gi|13507742|ref|NP_109691.1| DNA gyrase subunit B MPN003 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEDNNKTQAYDSSSIKILEGLEAVRKRPGMYIGSTGEEGLHHMIWEIIDNSIDEAMGGFASTVKLTLKDNFVTIVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGGLHGVGASVVNALSSSFKVWVAREHQQYFLAFHNGGEVIGDLVNEGKCDKEHGTKVEFVPDFTVMEKSDYKQTVIASRLQQLAFLNKGIQIDFVDERRQNPQSFSWKYDGGLVQYIHHLNNEKEPLFEDIIFGEKTDTVKSVSRDESYTIKVEVAFQYNKTYNQSIFSFCNNINTTEGGTHVEGFRNALVKIINRFAVENKFLKETDEKITRDDICEGLTAIISIKHPNPQYEGQTKKKLGNTEVRPLVNSIVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRKSPFDSGSLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEKSHFEQIFNNVEISALVMAVGCGIKPDFELEKLRYNKIIIMTDADVDGAHIRTLLLTFFFRFMYPLVEQGNIYIAQPPLYKVSYSNKDLYMQTDVQLEEWKQQHPNLKYNLQRYKGLGEMDAIQLWETTMDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIEQNARNVKNIDILast
1 -6.520 VFG000434(gi:17233482) (pefC) plasmid-encoded fimbriae usher protein PefC [Pef (VF0104)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  200..YADGSGEFTARDITLSTAISQVQGD--LLLGKSQTRSFYGAALRSNSNMLPWEARGYAPLITGVANSTSRVTISQNGYAVPYQLDDVRSVGNGDLVVTVEDASGH-GEVEYNVAVGRKSSNYKLKKPFAD-FDSTTLNAASILHGKYQAGVSVTQALGGFGAVSAGMNLSQAKYDNGDNKRGHSV-------SAKYAKSFSDSSDLQLLAYR---------YQSKGYVEFADFYSTDRY-------------------TRYNTKSRYEMRFSQRLGNSNLNLAGWQEDYWWMKGKAIGGDVSLSTTILDGVSVFLNGSYSKRPYLDKPDYSTSLSFSIPFTLGGVR-TGLSYSSSGRMGMNSGVSASPTDRLSYGLNTNLSDKGDRSLSGNLSYGFDAIQTNMMLSQGRDNTTVSGSVSGTILGTADSGLMMTKLGVARIPGVKGVRINGSNSKGYTVVNLSDYSLNRVSVDMENVPDDLELFNVVPTEKAVVYREFGAEHVL----YILRVKERDGRILNGGSAQTEQGLDAGFIGNGVLLMN........................................................................................................ 764
2 -6.070 VFG042552(gi:209921906) (faeD) fimbrial usher protein FaeD [K88 pili/F4 fimbriae (AI040)] [Escherichia coli SE11]  ali follow..  10  208..GDSGDNSTTINMFTATRAIRALSAD--LAVGKTSTGDLGSTGTYGVSLSRNNSMLGYTPVFSGIANGPSRVTLTQNGRLLPFSITDVPLYTSGDVTMKITGEDGREQVQNFPLSV-QLSPGQHEFSVAAGLPDDDSDLKGGVFAASYGYGLDGLTLRAGGVFNQDWQGASAGVVAGLGYLGAVSADGAYATAKYRDGSHSGNKVQLSWSKQLETTNTGLRVSWSRQSEEYEGMSSFDPTELWSQSNHGRRTKDEWNAGISQPVGGLFSLSVSWQRSYYPASMTGSYRYSDDNG--KETGITGSLSTQIKGVSLNLGWSGSRNSRGENNW-----SASASVSVPFTLFDRRSTSKGGGTGFSTGVSGSLNDRFSYGLGGGRDGDGGTSSYLNASYSGDRAYLNGVLNHSQSGGTSGSSVSGSVLDIMFSRTTGDTVAVVNVKDTPGVKVTSGDSDGNLVVPLNSYGWNTVTIDAGTLPLSTELQKVVPTDKAVVWMPFDALKVK----YLLQVKQRDGEFV-TWARDSKNTPLGFVANNGVLMIN........................................................................................................ 780
3 -5.890 VFG002548(gi:53720398) (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]  ali follow..  13  55.REPGKSYTFSAGVLDNVAGFDAISPREATQM-DPQQRLLLELAWEAFEDA--ADMRGSNCGVYVGVAGGNTLSIASNGPSMSVDTACSSSLVALHQAVQALQSG----EAETALAGGVN-VSFSKASMLS------------------PRGRCRAFDATGDGYVRAEGGAFVLLKP----LDRAIADGDTIHAVIAGSGVNSVGHSISVPGAAAQAALLRSVYARAGVDP-------------QSLAYLEAHGTGTAVGDPEARALIDVVSGARPADRPLLIGSVKTNIGHLETASGMAGLLKAVLCLKHRAVPRSLHFSIPNPAIDFDGGRLRVVDRYM-AGNAPLTVGVNSFGFGGTNAHIVLTEAPVSAVVADDVPTSATQAARAPSALVLTARSPNALGALANRYLAALENGGDWQALAAAAARRRQWLEHRAIVAPADAAEGRAA-----LAALARPAPEGGPSCVTTGRAPADAPRTALVFSGNGCGMGNALYAEDAVFRAALDEVDALWCADGSPSLVDVMRGGPGAQWLAGAATENAQPLLFAIQVG-AAAWVTGALSLTDAVRVIKIRSRAQAMTRGCGRMAAVGIGDAAARELIARHLARRVEIAGVNSPDAVTLAGEGLQVLEAALRGSGKFFQMLDL 740
4 -5.240 VFG001146(gi:581263) (hifC) membrane anchor [Haemagglutinating pili (VF0036)] [Haemophilus influenzae AM30 (770235)]  ali follow..  10  220..TDKGKNHYERGDTYLQRDFALLRGNTARIGESFGLRGLR-------DRMLAPSQRGFAPVVRGVANTNAKVSIKQNGYTI--DLYASGYSGDLTV--EIQESDGK-GHLRYQLAGGRY-LQGVLQYGLTNHLTLNSSLLYTRHYRAGLFGFGLNTPIGAFSADATWSHAEFPLKKVSKNGYSLHGSYSI--------NFNEIGTNLTLAAYR---------YSSRDFYTLSDTIGLNRTFKQFSGAYLPEIYRPKN---------QFQVSLSQSLGNWGNLYLSGQTYNYWEKRGTNTQYQLAYANRFHILNYSINLSQSIDKETGKRDNSIYLSLSLPLGDNHSADSSYSRSGNDINQRLGVNGSFGERHQWSY-NQGYRSYDANLAHNNSIGSYRASYSRDSLKNRSTSLGASGAVVAHKYGITLSQPVGESFAIIHAKDAAGAKVESGDYFGNAVVPYEINYIGINPSDAEANVEEATERQIIPRANSISLVDF---RTGKNTMVLFNLTLPNGEPV-STAQDSEGAFVGDVVQGGVLFAN........................................................................................................ 792
5 -5.210 VFG042537(gi:1232060) (f17d-C) F17 fimbrial uscher [F17 pili (AI037)] [Escherichia coli str. 111KH86]  ali follow..  10  197..SDGHAEGYRSIETNLQHDIAMLRAQTGELMDSNSLRGIR-------DRMLPGSLRGYAPVVRGMAGSNARVTVRQNGNII--DLYPSGYGGDLTV--TVTESDGQ-GFSRWQVAAG-------------RYRYGNRTFSDTVFQGTLQYGLTNDITLNTGMSTAPHYLSGLGGVAFNTPLGAVATDITLARTTFPGSDTTHRGYSLHAGYSARIPETSTNVTLAAYRYSSRDFWSLRDAILTRNRDVINDSSVRSATGYRPRNQLQLTVNQSLGEGWGNLYLTGATYHYWGHTGTFNE-YQAGYNNVWKKMSYQIGFSQTRRSGDYHHDNRFFFSFSLPLSDTGRTLKNSNSIQSSISGVSGDDNQLSYGVSLNTQENGPTGYAVNGSYRSPVATLQATAGNDSRHNRQISAGISGAIVAHPFGVTASNDLGDTFTVIHADGAGGAVINNADPWGNGIVPYEKNYISIDPTALAADVESATEREIIPRANSTTMVTFT-TKTGKAMLFDVKMPDGTPPPMAAEALTADGKSAGYIAQGGRLFVR........................................................................................................ 774
6 -5.150 VFG002276(gi:18309155) (colA) collagenase [kappa-toxin (VF0388)] [Clostridium perfringens str. 13]  ali follow..  11  104.....................................................................................................................................................................................................................................SDLVELIKTISYENVPDLFNFNDGSYTFFSNRDRVQAIIYGLGRTYTADDDKGIPTYLGFYNKQLSYLNTPQLKNECLPAMKAIQYNSNFRLGTKAQ--DGVVEALGRLIGNASADP-DFKDNIDKYGSNYSKGNAVFNLMDAKNTEFYNRIDPYMERL-DNAWLVNNALYYTGRMGKFREDPSISQRA-----LERAMKEYPYLSYQYILDLNFGGKNSSGNKADAREKYLPKTYTF-GKFVVKAGDKVTEEKIKRLYWASKE--------VKAQFMRVVQNDKALEEGNPDDILTVVIYYKLNRIITDNGGIYIENIGTF---------FTYERTPEESIYTLEELFRHEFTHYEGTAEFFAGS--GLAYDRNNRMSLYGVLHAKYGSWDFYNALSNYMYNNNMGMFNKMTNYIKNNDV 613
7 -5.150 VFG000008(gi:33592929) (fimC) outer membrane usher protein precursor [Fimbriae (VF0031)] [Bordetella pertussis Tohama I]  ali follow..  218LGWGQGRFTRRSQRTSLQTDIPSWRARSGEYFAPYSMRGML-------TAMLPYSERLYRPTIRGVARTRANVKVYQAGVLV--DYSPASYGGDLRV--VVTEANGA-GQTQWSFSAGRYRNYRNDGQDRPWVTQLTGRHGGLLIAQAYQAAADATLSRSQLSTTGNANGSSLRFS--SKTLSGTNTAIRLATLRYSSSGFWNFADAVNAGPVETNGRNGRFGLYSLLGRERPRSVTLSQPLGGYGSLYVSALRRT------GSSRVDQQTQLGYSTQVGRVGVNLDVS-RTENRRSTEHQVMLNLSIPLYGATSSGVVTGSLARTGSAPVQQS--VNYSGMSGERDQYTYGLGVQRAGTSAQYALNGSWSGTYGEV----------------------SGQLTHGRSYSQYQINGSGGLVAHAGGVTFGQYQAGTIGLIQAEAAAGAKVVNTDRSGYGLVSLTPYSLNEVELSPQDLPLDVQLEQVIPRAGAVVALRFP-TRHDVAAMLVAEPGSEGALVFGTEVRDGAGKVVGVAGQGASALVR........................................................................................................ 797
8 -5.130 VFG010846(gi:52841130) (lspC) general secretion pathway protein C [lsp (SS211)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]  ali follow..  10  72.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GVYVPADLNEDNVKQSMLNVTLVGILFADKIEESQVIIRSASGEEKTYNVGDKIPGGATIKRIMPGGVLVERDGTLE.................................................................................................................................... 148
9 -5.130 VFG000857(gi:22001087) (agg3C) usher protein [AAFs (VF0214)] [Escherichia coli 55989]  ali follow..  10  221..SSGQVGKWESSYIRAERGLNNIKSR--LTLGEDYTPA----IFASVENMIPYDQRGFAPVIRGIARTQARIEIRQNGYLI--DLPITGSGGEFQV--TIFESDGA-GYLKYNISAGQYGVGLSLMGAASGQQKGYDFDTGNSWRIRYDKSFELTDTSFSAASYQYSNEGYHELSDILDTYRSGANFVFNDTDRKRRRITININQSLGPWGFIGLSGGRDEYKGGDRQDYIGASYSMSWKDISFSVNWTRNRNVGDYFSNRTFNEMSIPLKHWLGKNDNDVNATAQIQHSTRQNTRYEMGLNGRAFDQKLYWDIREQIVPGSLLMQISR---SGSYGELVGMYSYNSHTRQMNAGMSGSIAMHSEGITFGQRFGD---------TMALIAAPGVRGASVGGWPGVSTDSRGYALVSYITPYQENI-------------ITLDPTTFPENAEVLQTDTRVVPTKGAVV---RAKFKTRVGNRAVVRLARADG---------TPLPFGTVVTLEGKTEVSNSTGVV-------------DKGMVYLS........................................................................................................ 807
10 -4.790 VFG000853(gi:4689215) (aafC) aggregative adherence fimbria II usher protein AafC [AAFs (VF0214)] [Escherichia coli str. 042]  ali follow..  227..SSGQSGKWESLYIRAERGLNSLKSR--LTLGENYTPS----IFDSVESMVPYNQREFAPVVRGIARTQARIEVRQNGYLI--DLPVTGSGSDLQV--TVRESDGREGYLKYNVMAGQYGLGWSLLGAVSGQQKGYNYETGNTWRIRYNKSFELTGTSFTAASYQYSSSGYHTLSDVLETYRDDGRFAYRSTDSRTSRTTVNLSQSLGRWGYLGLNGSRDEYRDRPHQDYIGASYGASWNRMSLSVNWSRNHSTRGYYGSKSRTEMSIPLESWLGRSDNNISATAQMQRSTEQNTRYELGLNGRAFDRRLFWEVHEQMVSGSEYNTGTSRLNSGTYGELAGMYSYSSNMRQINAGMSGSMVAHGEGVTFGQRAGD---------TVTLIAAPGVSGASVGDWPGVRTDFRGYALAGYASPYQENV-------------ITLDPTTFPEDAEVPQTDSRVVPTKGAVV---RAGFRTRVGGRALVSLTRQDG---------SSLPFGAIVTLEGKPGETSGSAGVVDDKGRVYLSGLSETGKLKAQ........................................................................................................ 826

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.