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anford Burnham Prebys Medical Discovery Institute
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Query: gi|13507741|ref|NP_109690.1| DnaJ domain-containing protein MPN002 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTLYDLLELPQTATLQEIKTAYKRLAKRYHPDINKQGADTFVKINNAYAVLSDTTQKAEYDAMLRFSEFEDRVKRLDFSIKWHEQFMEELQFHHNWDFDFIRNREYTQPTPTNNKYSSFLDKDVSLAFYQLYSKGKLDFDLEDTLLRRHSIKQAFLKGKKLNDVLKEQYNYLGWLEAKRYFNIDVEIELTPKEVREGGVVNLPLKIKVISNNYPGQMWYELNKNYSFRLLWDIKNGEVAEFFGKGNRALGWRGDLIVRMRIVDKIKKRLRIFSSHFEQDKTKLWFLVPQDKQDNPNKWVFDYKTHEFIVLast
1 -6.400 VFG002034(gi:13508191) (hmw3) cytadherence accessory protein HMW3 [Cytadherence organelle (VF0330)] [Mycoplasma pneumoniae M129]  ali follow..  22  2..........TDKERAKLAKAYQKIQKSY-PDIN---DAK----NKLHALYQDPETGN........................................................................................................................................................................................................................................................... 50
2 -5.610 VFG002533(gi:53720918) (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]  ali follow..  1........MSKGKDQAIIVKRVNQQKKGHHGGAWKLAYADFMTAMMAFFLLTPVQLKGIAEYFNTPLKAAIFGSGDRSADDASIIKGGGRDISSLDAGTTRRTDGSTHLAERVAKKSEDDALDLQVKLMAAIEANPTLRQFKQQIRIDS-----TLMGLRIEIVDTQKSSDAVEPYMRDILREIGKTDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAKVLRVLGLASTQNLNKAD--ISIIVLNRKSEL......................................... 292
3 -5.450 VFG000985(gi:31983586) (ipaD) type III secretion system hydrophilic translocator, needle tip protein IpaD [TTSS (VF0118)] [Shigella flexneri 2a str. 301]  ali follow..  15  276...YQAWNAGFSAEDETMKNNLQTLVQKYS-NANSIFDNLVKVLSSTISSCTDTDK............................................................................................................................................................................................................................................................. 327
4 -5.420 VFG002507(gi:161723214) (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]  ali follow..  46..............................................................................................................PAAQQDGESIRRAALAFLQQQAAGLPGKTTVTFPRGLAACLPSGARLWGRTTVGVRCAGERPWTIYLQAKLAVQATYYVAARQIAPGETLTAAVARDGDLTLLPLAVITDAQQAVGATALTRVAAGLPLRRDLLKSAASVSIGQ---TVRVVASGQ--------TISAEGSVL--------NNAAPGQQVRVRMAAGQI 239
5 -5.300 VFG000544(gi:16766189) (sipD) type III secretion system hydrophilic translocator, needle tip protein SipD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  287...YQAWQSGFKAQEENMKTTLQTLTQKYS-NANSLYDNLVKVLSSTISSSLETAK............................................................................................................................................................................................................................................................. 338
6 -4.860 VFG001906(gi:15791888) (flgC) flagellar basal body rod protein FlgC [Flagella (VF0114)] [Campylobacter jejuni subsp. jejuni NCTC 11168]  ali follow..  13  90.......SVVVDKVVRD-DKDFRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQ........................................................................................................................................................................................................................................................ 142
7 -4.860 VFG002447(gi:53722550) (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]  ali follow..  17  254...YQAWNTAFSGQKDNIQNDVQTLVEKYS-HQNSNFDNLVKVLSGAISTLTDTAK............................................................................................................................................................................................................................................................. 305
8 -4.820 VFG014681(gi:15600146) (motB) flagellar motor protein [Deoxyhexose linking sugar, 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]  ali follow..  10  8.................IVKRVKRYAAGHHGGSWKIAFADFATAMMAFFLVTPEQKKAISGYFQDPIGFSESASPYVIDLGGTPTPAPDKTLNPQVQAQPDSNESRISPEQDHQVNADQAENLLLQELQNKVDENPMLKDFKDQIHFEI-----TRDGLRIQIVDAANGSARLQPYFEDILLAMAETQVPNKISISGHTDAKPYAGNGDFGNWELSANRANAARRAL-VAGGYPEGQIAQVVGYASARLFDDKD--IDIVVLTRKAQK......................................... 284
9 -4.740 VFG000069(gi:16802251) (plcB) phospholipase C [PlcB (VF0067)] [Listeria monocytogenes EGD-e]  ali follow..  11  120.HFYNPYLPGFANAKITGAKYFNQSVTDY---REGKFDTAFYKLGLAIHYYTDPGYHCAYENY...................................................................................................................................................................................................................................................... 199
10 -4.730 VFG006686(gi:15646165) (flgC) flagellar basal-body rod protein FlgC [Flagella (CVF223)] [Helicobacter pylori 26695]  ali follow..  15  87.......SVVVDKIVRD-DSEPLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQ........................................................................................................................................................................................................................................................ 139

FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 3 2 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.