current user: public




13507741
Query: gi|13507741|ref|NP_109690.1| DnaJ domain-containing protein MPN002 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .
# Score Template Links and tools%idFirst MTLYDLLELPQTATLQEIKTAYKRLAKRYHPDINKQGADTFVKINNAYAVLSDTTQKAEYDAMLRFSEFEDRVKRLDFSIKWHEQFMEELQFHHNWDFDFIRNREYTQPTPTNNKYSSFLDKDVSLAFYQLYSKGKLDFDLEDTLLRRHSIKQAFLKGKKLNDVLKEQYNYLGWLEAKRYFNIDVEIELTPKEVREGGVVNLPLKIKVISNNYPGQMWYELNKNYSFRLLWDIKNGEVAEFFGKGNRALGWRGDLIVRMRIVDKIKKRLRIFSSHFEQDKTKLWFLVPQDKQDNPNKWVFDYKTHEFIVLast
1 -34.900PF00226.26; Q22028_CAEEL/17-79; DnaJ domain  ali follow..  43  1.DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPHAQEEFKKVSIAYSVLSDPNKRRQYD........................................................................................................................................................................................................................................................ 63
2 -21.100PF03656.8; TIM16_CAEEL/1-135; Pam16  ali follow..  11  66.ESLQILNVKTPLNREEVEKHYEHLFNINDKSKG-GTLYLQSKVFRAKERIDEEFGRIELKEEKKKEENAKT............................................................................................................................................................................................................................................. 135
3 -13.600PF00684.14; DNAJ1_CORGL/147-211; DnaJ central domain  ali follow..  1..................................................................................................................................................CTKCHGSGSASDKKPVTCGTCNGAGEIQEVQRSFLGNVMTSRPCHTCDGTGEIIPDP------CTECAGDG............................................................................................ 65
4 -11.300PF01556.13; A2FIH5_TRIVA/258-337; DnaJ C terminal domain  ali follow..  16  1.....................................................................................................................................................................................DLQETIHISLKEALLGFTLKTIGIDG---------------KEITKNVIGPIDSGYKEVIPDSGMTKTDQRRNLIVKVLVD---------FPNALSPEQIQ........................... 79
5 -8.740PF03343.8; Q16G32_AEDAE/155-807; SART-1 family  ali follow..  23  609LEYIDDNG--HLLTP---KEAFRYLSHKFHPGKNK-VEKRLKKNEQ....................................................................................................................................................................................................................................................................... 651
6 -8.690PF11833.3; Q3M3C6_ANAVT/13-207; Protein of unknown function (DUF3353 topsan)  ali follow..  23  1.........SEDASFDEIQDARNRLFEQYSGD-----SKSVEIIEAAYDAILMDRLRMRQE........................................................................................................................................................................................................................................................ 47
7 -8.000PF03105.14; Q6BRW8_DEBHA/1-387; SPX domain  ali follow..  19  329........VPYAYARKQLEDAYGALSLKSFRELNRTA---FRKLTKKFDLAMHTSISAPY......................................................................................................................................................................................................................................................... 382
8 -5.680PF11126.3; A7XFL4_9CAUD/23-91; Transcriptional regulator DsbA  ali follow..  14  15..YGDKIKEIKQRAKEEL-KMWGILFKLYHQQQRETFEAERDEAVELYDRV.................................................................................................................................................................................................................................................................. 66
9 -5.470PF05685.7; Q7NGQ0_GLOVI/49-177; Putative restriction endonuclease  ali follow..  12  44.DWFAVIGVPSLYEERELRRSYVLWQEGIAPTV-------------VIEFLSPSTKWQVYERI...................................................................................................................................................................................................................................................... 109
10 -5.410PF09011.5; Q66IA8_DANRE/6-75; Domain of unknown function (DUF1898 topsan)  ali follow..  16...................KTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFEDL....................................................................................................................................................................................................................................................... 58

FFAS is supported by the NIH grant R01-GM087218-01
5 9 9 8 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Locations of visitors to this page
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.