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Query: gi|13507741|ref|NP_109690.1| DnaJ domain-containing protein MPN002 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTLYDLLELPQTATLQEIKTAYKRLAKRYHPDINKQGADTFVKINNAYAVLSDTTQKAEYDAMLRFSEFEDRVKRLDFSIKWHEQFMEELQFHHNWDFDFIRNREYTQPTPTNNKYSSFLDKDVSLAFYQLYSKGKLDFDLEDTLLRRHSIKQAFLKGKKLNDVLKEQYNYLGWLEAKRYFNIDVEIELTPKEVREGGVVNLPLKIKVISNNYPGQMWYELNKNYSFRLLWDIKNGEVAEFFGKGNRALGWRGDLIVRMRIVDKIKKRLRIFSSHFEQDKTKLWFLVPQDKQDNPNKWVFDYKTHEFIVLast
1 -6.330sp|Q9UBC1|IKBL1_HUMAN NF-kappa-B inhibitor-like protein 1 OS=Homo sapiens GN=NFKBIL1 PE=1 SV=1 (Range: 294-381)  ali follow..  11  20MAAALVARGPPLEEQGALRRYLRVQQVRWHPDRTWELGRVMGAVTALSQALNRHAEALK.......................................................................................................................................................................................................................................................... 88
2 -5.710sp|Q71F56|MD13L_HUMAN Mediator of RNA polymerase II transcription subunit 13-like OS=Homo sapiens GN=MED13L PE=1 SV=1 (Range: 1225-1529)  ali follow..  10  177LPFWERLLLDPYGGHRDVA------YIVVCPELLEGAKTFFRDLSAVYEMCR................................................................................................................................................................................................................................................................. 225
3 -5.470sp|Q9H074|PAIP1_HUMAN Polyadenylate-binding protein-interacting protein 1 OS=Homo sapiens GN=PAIP1 PE=1 SV=1 (Range: 387-479)  ali follow..  25  17.TFYTSDGVPFTAADPDYQEKYQELLERFFPDYEENGDEMDPEIEEAYECLESERKRKQ.......................................................................................................................................................................................................................................................... 93
4 -5.390sp|Q9UHV7|MED13_HUMAN Mediator of RNA polymerase II transcription subunit 13 OS=Homo sapiens GN=MED13 PE=1 SV=3 (Range: 1187-1461)  ali follow..  12  166LPYWERLMLEPYGSQRDIA------YVVLCPELLNGAKSFFRDLTAIYESCR................................................................................................................................................................................................................................................................. 214
5 -4.740sp|Q14573|ITPR3_HUMAN Inositol 1,4,5-trisphosphate receptor type 3 OS=Homo sapiens GN=ITPR3 PE=1 SV=2 (Range: 726-880)  ali follow..  14  30LGVDLIF-MADEMLPFDLRASFCHLMLHVHVDRDPQELVTPVKFARLWTEIPTAITIKDYDS....................................................................................................................................................................................................................................................... 92
6 -4.460tr|B4DVM5|B4DVM5_HUMAN Uncharacterized protein OS=Homo sapiens GN=WDR24 PE=2 SV=1 (Range: 391-511)  ali follow..  18  5....SALSVFETEPGGGGMRWFVDTAERY--DHNAKVARELNQVAQTWTMLQ................................................................................................................................................................................................................................................................. 63
7 -4.320sp|A8MPX8|PP2D1_HUMAN Protein phosphatase 2C-like domain-containing protein 1 OS=Homo sapiens GN=PP2D1 PE=2 SV=2 (Range: 59-168)  ali follow..  17  30...LATLGFQKKPQPSVIAVQRQFMISKL--SSFMFTEKTLQSINNAFELLWKKQIPAYY......................................................................................................................................................................................................................................................... 89
8 -4.240sp|Q96S15|WDR24_HUMAN WD repeat-containing protein 24 OS=Homo sapiens GN=WDR24 PE=1 SV=1 (Range: 503-622)  ali follow..  18  23....SALSVFETEPGGGGMRWFVDTAERY--DHNAKVARELNQVAQTWTMLR................................................................................................................................................................................................................................................................. 81
9 -4.070sp|Q07617|SPAG1_HUMAN Sperm-associated antigen 1 OS=Homo sapiens GN=SPAG1 PE=1 SV=3 (Range: 1-76)  ali follow..  25LDFKYIEKCSDVKHLEKILCVLRSGEEGYYPELTEFCEKHLQALAPESRAL.................................................................................................................................................................................................................................................................. 75
10 -4.020sp|Q5EBM0|CMPK2_HUMAN UMP-CMP kinase 2, mitochondrial OS=Homo sapiens GN=CMPK2 PE=1 SV=3 (Range: 142-243)  ali follow..  20  30.QLWQRLWEVQDGRRLQVGCAQ---EPPLHPVVDLPSSVVFPDREAARAVLEEPEARAVLDLVDQ.................................................................................................................................................................................................................................................... 101

FFAS is supported by the NIH grant R01-GM087218-01
1 1 7 6 8 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.