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Query: gi|13507755|ref|NP_109704.1| ribosomal S6 modification protein MPN016 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKHISAVYNPAFTNIASKLNQTELLKDAAQSLNIQLDFFTCFDINTNQDKTKLPFKSNTILFLDKNIALAQWLESVGLRVINSSIAINNADNKALSHAVLAQHPTIKQIPTLIGPQNFRLAWYPEKLEQFIEQIKRCFQFPVIVKSIYGSFGDYVFLCKDEQKLRQTLSGLTEQIIVQQYIATSNSEAVRVIVVNNQVVGALHTQNEGDFRSNLNKGAVGEPYQLSQEETKLAITISQAMQLFYCGIDFLFDQDRSLIFCEVNSNVQLTKSSMYLKTNLAIQLLASIALast
1 -29.100[HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)  ali follow..  20  24MRIAFFV-----IETEGPTFATGLLAMAALNRGHDVVYLTPGDFTLRSDDTLAVHERITMDVEEIDALMLRNAEQRGVVVLNDPEGLALAQNKLYFQSF----------PEIVRPTTLI-----SRNVEEIRAFADTHPKGVIVKPLQGSGGKNVFKIGSSKELNQIFEAVSLELIAQAYLPAAKEGDVRFFMMNGRPLAALRRVAKGDLRSNIHANGTAEAVKVTDEIVELAEMMRPKLGMFLVGLDIV-----GDKILEVNSPGGLSNILELTNVDFSDTIIEAVE 350
2 -21.600[R] COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily)  ali follow..  15  60......................DSMEKYLEKSDAFLIIAPEDDFLLY--------------------TLTKKAEKYCENLGSSSRAIAVTSDKWELYKKLRGE-------------------------QVPQTSLRPLDCKFIIKPRTACAGEGIGFSDEVPD----------GHIAQEFIE---GINLSVSLAVGEKCLSVNEQIINNFRYAGAVVPARISDEVKREVVEEAVRAVECVENGYVGVDIVYSDQ--PYVIEINATTPVVAFSRAYGASVADLLAGGEV 272
3 -21.300[M] COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes  ali follow..  14  5.....VLYGGTSAEREVSLSSGKGIMEALKANGHEVIGIDFHPDQVRDLVDLDVDLVFIGLHLGEDGKVQALLDLLNIPYVGTGVGSALAMDKAKAKLFFEKAGIRVAEEVVL-----------HSFTYDANAFNFTGTYPVVVKPNQEGSTIGLTVAETEEELLQGIERHDDTILIEEFIA---GTEVTVAVLGNKVVEIVPKNKLYDYESKYAPGMSEHIVEHTAYVQQAAVRAHQALGCVYSRVDFIVPNDGSPVILKVNTLPGMTPTSKGVGMSYEEMIQTFVN 300
4 -19.700[TU] KOG3895 Synaptic vesicle protein Synapsin  ali follow..  12  92....LLVLDSKYFRGRRLHGDFDIRVEQAEFRDITVVSSADTGPVVTMARVARSFRPDFVLIRQP--STILGLKYGGVPSINSLHSIYQFQDKPWVFSHLLQLQRRLGRDGFPLIEQTFFPNPRDTFFLSVHLQFQFTKFPSVLKAGHCHGGVATARLENQSALQDAAGLVSGYCTIEPYIDAK---SVHIQKIGNNYKAFMRKSITGNWKTNQG-SAMLEQITLTEKYKSWVDEISELFGMEVCGLSVVVAKDGREYIISACDST...................... 428
5 -18.000[R] COG3919 Predicted ATP-grasp enzyme  ali follow..  12  1MTIPGVVIIGGAHGT---------LARSLGVLNVPVYYLTHMAFLREMAEKPGLKGCLLVPSGDGEVQLVEELSALYKIILPEWTNLQWLCEKPLLYKRAAELGVSIPRTYAL--------------TSAADIDGLDVMFPVILKPHMGGARAKVIRADDREELKAAFVDASGNVVVQELIP---GGGESQFSYNGEPIAEFTARRARQYPVDFGYTSTRVEVVDNRQAIEAARKILKSAGHGLVEVEFKLDRDGALKLLDVNPRPW--GLCSAAGINLGGLLWRVAN 311
6 -15.300[R] COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase  ali follow..  14  12...................VNTRPVVESAFRLGYRVYSAGCGRFHENFSQEKLLEAASDFIERADGIIPLTGAPPLPGEKVLGNSRVDHVEDKYRLYRRIRNS---------YPTPETHLISDPAEAMEIVAAG----EKKYIAKPVSGAGGFGVTEFREGDG----------EFLLQEYIE---GVPVSASVLSTITVLTSRQRGVPGFEGQFVYAGNMTP-GPSGEIEDLASDLILDLSLGSNGVDLIMR-DSELYVIEVNPQGTFECAEASLGINMVDAHIR... 283
7 -15.200[I] COG0439 Biotin carboxylase  ali follow..  14  9.NRGEIALRVIRTAREMGIQTVV-VYSTADEKSLPVLLADESVCVGPPASNQSYLNIPNILFMAENPDFAEMCREHGIVFIGTPESMRALGSKAGGREIAAQSNVPTVP-----------GTGVLESVDAALLAAKQIGYPVLLKASAGGGGRGQKVIRTQEELQKGFNQAQEEIIMEKFLEEFRHIEVQVMGIGERDCSIQRRNQK------IEEAPSTLPESLRQEILAAGVRLAQFVNYAGAGLEFIMDRDGNYYFMEMNTRIQVEHSEMISSLDLVRLQIEIAA 315
8 -13.900[R] COG1759 ATP-utilizing enzymes of ATP-grasp superfamily (probably carboligases)  ali follow..  109..................................................................TGIDRVENEFLVPMFGTRSRTEERSEEKSYYWLLEKAKLPYP--------------------EPVSPEEIDDVGLVIVKLPHKRLERGFFTAASYKEFKEKSEKLLAKARIERYIIGPV-GEIELLGIDWRQQLTLPEWQFEPEYTVCGHASSTLRESLLEKVFDMAEKYVEATKKGIIGLQTAVDKDLNFYIYDVAPRGGGTNIHMAMGHPYGNSLWR... 353
9 -13.400[I] COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit  ali follow..  17  83.............................................................FLSERAEFAQAVIDAGLIWIGDPDVIEALGDKVMARRIATGVGAPLVAGS----------DGPVSSAAEVTAFAEQHGLPVAIKAAHGGGGRGLKVAWKMEEIAELYESARGECFLERFLDRPRHIEAQVIADKHGNVLVLGTRDCSLQRRNQKLIEEAPAPFLSDEQRDAAKAICAAAGYSGAGVEFLLGVDGTISFLEVNTRLQVEHTEETTGIDLVIEQFRIAE 316
10 -12.700[IE] KOG0238 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit  ali follow..  15  56.NRGEIACRV-IKTARAMGIKTVAVHSDVDSNSLHVKMADEAVCVGEAPTAKSYLRADRILFLSENTKFAAELEKAGAKFIGNSKAILDMGDKIHSKKIATAARVSMIP------------DGEIADEDMCVKVSRDIGYPVMIKASAGGGGKGMRVAWNDKQAREGYRLSKQEMLVEKFIDNPRHIEMQVL---GNALWLNERECSIQ-RRNQKVIEEAPSSFVPPEMREQAVQLAKAVGYDSAGVEFLVDSQRNFYFLEMNTRLQVEHTECITGIDIVQQMLRVSY 364
11 -12.200[F] COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase)  ali follow..  13  24......................RMLAMAAARLNHRTIVLEPQADCPAAQVCNDQIVAEY--LASRCDVVTYEFENVPVAAAEPAQALSASQDRLTEKRFLNGCGIPTADFRAV------------DSQDELEAALTAFGGKGVLKTRRGYDGKGQRLFRGGENLTGAFAALGGPLILESFVA-----------FEREISIIAARFQDGTVTCNVHLNGSTVPAALSDAAKAVAVQSAEKLALEYVGIEFFVLPDGSLVANEMAPRVHNTGHWTEAACAISQ....... 291
12 -11.800[C] COG1038 Pyruvate carboxylase  ali follow..  12  48......IKTVAIWAEEDKLSLHRFKADESYQVGRGPHLLSIEEVIRVAKLSGADAIHPGYGLLSESPEFVEACNKAGITFIGTPDTMRQLGNKVAARNLAISVDVPVVPAT----------NPLPDDIAEVERMAEEIGYPVMLKASWGGGGRGMRAIRKKEDLAREVTEAKREVYLEKLVERA--RHVESQILGDTVVHLFERDCSIQ-RRNQKVVERAPAPYLSEAQRQYSLKIAAATNYIGAGVEYLMDADGKFYFIEVNPRIQVEHTEVVTGIDIVKAQI.... 343
13 -11.400[O] KOG2158 Tubulin-tyrosine ligase-related protein  ali follow..  16  178...........................................................ILWSDSFPGVELFKNMKRFQQINHFPGMIEICRKDLLSRNLNRMLKIFPQDYKIFPKTWMLPADYGDAMNYALNHKR----TFILKPDSGAQGRGIWLTNDLKTIGPHERLICQTYIHRPLLIDGYKFDLRVYTLITSV--GLARFATNKYVTNYSVNKRNSHYELCDNDDDVIIKTVLSAWFEILGFDILVDWKLKPYILEVNHSPSF-HTNEQVDREVKRPLIRDT. 471
14 -11.200[F] KOG2835 Phosphoribosylamidoimidazole-succinocarboxamide synthase  ali follow..  12  16......................RMIVEAANRLNIKTVILDAENS----PAKQISNSNDHVNGSFSNPLDIEKLKHPKLKIYPSPETIRLIQDKYIQKEHLIKNGIAVTQ----------SVPVEQASETSLLNVGRDLGFPFVLKSRTAYDGRGNFVVKNKEMIPEALEVLKDPLYAEKWAPFT--KELAVMIVGLVFSYPIVETIHKDNICDLCYAPARVPDSVQLKAKLLAENAIKSFPCGIFGVEMFYLETGELLINEIAPRPHNSGHYTIDACVTSQ....... 289
15 -10.300[F] COG0151 Phosphoribosylamine-glycine ligase  ali follow..  14  80....................................................................VVDAFREAGLKIFGPAKAAAQLESKAFTKDFLARHKIPTA--------EYQNFTEVEPALTYLREK----GTPIVVKADGLAAGKGVIVAMTLQEAEDAVRDMGSRVVIEEFLDGEEASFI-VMVDGKNVEPMAKRVGENDTGLNTGGMGAYSPAPVITPENGMAAEGNVYTGFLYAG--LMIMPNGQPKVIEFNGDPETQPIMLRLKSDLVELCLKAC. 315
16 -10.100[F] COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase)  ali follow..  15  51...........................QVAHRAYTISMLDGEALKALVEKEKPDYIVPEVEAIATATLV--ELEQAGFTVIPTAKATQLTMNREGIRRLAAEELGLPTSNYQFV-----------DNFDDFKRAVEKIGIPCVVKPIMSSSGHGQSILKSVEQIPSAWEYAQQRVIVEGFVK-----DYEITLLTVRHVHGTHIQIDGDYRESWQPQAMSAVA---EKAQAIAEKITGALGRGIFGVEMFVCGD-EVIFNEVSPRPHDTGMVTLISQELSEFALHARA 306
17 -9.520[O] KOG2157 Predicted tubulin-tyrosine ligase  ali follow..  16  216............ITYKFHQTETKLLRKLFNVHGLTEVQGENNNFN--------------LLWTGVHMKLDIVRNLAPYQRVNHFPRSYEMTRKDRLYKNIERMQHLRGMKHFIVPQTFVL---PIESRDLVVAHNKHRG-PWIVKPAASSRGRGIFIVNSPDQIPQDEQAVVSKYIVDPLCIDGHKCDLRVYVL---VTSGIVRLATVKYDCNYSINKYHSDYIRSSDAEDLIIKAVLACAFELYGFDILIDNALKPWLLEINLSPSM-GVDSPLDTKVKSCLMADL. 542

FFAS is supported by the NIH grant R01-GM087218-01
8 2 7 8 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.