current user: public




Query: gi|13507749|ref|NP_109698.1| hypothetical protein MPN010 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MAYSPSLNDIKSILNKYTSKDYELKCENRYDGKLELWLKGVFEEIVKTPGTRYVTHKQLDEKLKNFVTKTEFKEFQTVVMESFAVQNQNIDAQGEQIKELQVEQKAQGKTLQLILEALQGINKRLDNLESKLast
1 -6.640[S] COG5374 Uncharacterized conserved protein  ali follow..  10  128..................................................IELLTMKDIYRASPPVASSDVKKNDSVTAEAAAQSGASKDDHGDEKNFELLKKIQDIDDEIARLKEKSESLQEEIN..... 203
2 -6.290[U] KOG3202 SNARE protein TLG1/Syntaxin 6  ali follow..  18  130...................................................................................QYQEQLYQQQDVMLDGVYDTIGNIRGQAALMGEELGQQADLLDTLDNS 177
3 -6.280[M] COG4238 Murein lipoprotein  ali follow..  20  31......................................................................................SSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATK 75
4 -6.070[S] COG2900 Uncharacterized protein conserved in bacteria  ali follow..  13  8..............................................................................................ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDH 44
5 -5.920[S] COG5280 Phage-related minor tail protein  ali follow..  11  17........................................................TGVTNGLKDIGKQ------SNSVNSELRDVERLLKLNPNNVELVAQKQQLLSKQVELTTKKLDGLKGAQADVDRQ 85
6 -5.870[S] KOG4657 Uncharacterized conserved protein  ali follow..  14........................................................NEFWNKFKSTDTSCQMAGLRDTYKDSIKAFAEKLSVKLKEEERMVEMFLEYQNQISRQNKLIQEKKDNLLKLIAE 88
7 -5.770[V] KOG1962 B-cell receptor-associated protein and related proteins  ali follow..  15  135.......................................................FKQAQSATAAARSLLENKNTEKAKEAGEDTTLIELNKLRERVQELTSDLNREKKDKEAVKSQAESINREYDRLTEE 210
8 -5.590[S] COG3165 Uncharacterized protein conserved in bacteria  ali follow..  17  120.......................................................AELLAPYTGDIAAEGISKAMRGGAKFLHHGIKRQQRYVAEAITE-PLEVAWFAEETAAVERAVDALTKRLEKLEAK 201
9 -5.390[U] KOG3287 Membrane trafficking protein, emp24/gp25L/p24 family  ali follow..  11  37.........FFQPVDLAKHKTLEVDYQVIDGGDLNINFANILKQDQLKVDGSHRIELNFDNSFSYQSRK-VVFFEIFLFDAHGNLDEADLSAMARTDSDLSAKMNELGVTIDEFHRRANGIKNNLNKVE.. 168
10 -5.340[R] KOG4398 Predicted coiled-coil protein  ali follow..  12  89......................................NGNITHSQAERPESLTEKQQRYINLQAGLKTFSTRYERLIGQRSNEDRLMAIKAKRKQLELLQQLISGTGQRLRVLGERRDELRRANAEKRKN 182

FFAS is supported by the NIH grant R01-GM087218-01
8 5 6 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.