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Query: TM0014 TM0014 281895 Purified-2001-01-30, from JCSG0516

Results of FFAS03 search in SCOP206
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MREREIVDKLTSAFFAENTIISFTSQLDEALTRKLRRMQRRIEEVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRSIEKLIQNIMRIARETNILALNATIEAARAGEAGKGFMIVANEVQNLSNETNEVTKQIVEKAREILESSQRSLENLEFMANLFETVGKTLQNMVRFMENNVKLLQEVRNSLDTSKESLSEKSAEIDSATKVLEETAGGFTTINRVINSVITAQRKLKDLKILast
1 -8.130d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  14  8......................................QKAGEAINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGNKRALIQCAKDIAKASDEVTRLAKEVANLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIK.......................................................................................... 167
2 -7.030d2pyba_ a.25.1.1 (A:) Dodecameric ferritin homolog {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}  ali model 3D-neighbors follow..  12  1....................................................................................................................DDLDAIQLKLQELLASLHIFYSN--LRGIHWNIKDTNFFVIHKKTQKLYEYIEKIIDIVAERSRMLGYDSEFRYSEFMKKSFIKELDIESTSNFLPSMESIVCSLTEILKNIFGMRKLIDTAGDY..................................... 123
3 -6.860d1mzpa1 e.24.1.1 (A:2-217) Ribosomal protein L1 {Sulfolobus acidocaldarius [TaxId: 2285]}  ali model 3D-neighbors follow..  10  4.............................................................................KESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQ---EWFLINQESMALAGRILGPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTKDQPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAKVETNLRNIYV 204
4 -6.490d2cf7a_ a.25.1.1 (A:) automated matches {Streptococcus suis [TaxId: 1307]}  ali model 3D-neighbors follow..  11  7....................................................................................................................PSLADSKAVLNQAVADLSVAHSI--LHQVHWYMRGRGFMIWHPKMDEYMEEIDGYLAEMSERLITLGGAPFSTLKEFSENSQLKEVLGDYNVTIEEQLARVVEVFRYLAALFQKGFDVSDEEGDSVTN.................................. 132
5 -6.400d2fjca1 a.25.1.1 (A:27-177) Dodecameric ferritin homolog {Treponema pallidum, TpF1 [TaxId: 160]}  ali model 3D-neighbors follow..  14  4....................................................................................................................RAIAAICEQLRQHVADLGVLYIK--LHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGI.................................... 130
6 -6.380d1r0da_ a.216.1.1 (A:) Huntingtin interacting protein 12 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  17.............................ATSAAIEDAVRRIEDMMNQARHASSGVKEVNERILNSCTDLMKAIRLLVTTSTSLQKEIVESGRGAATQQEFYAKNSRWTEGLISASKAVGWGATQLVEAADKVELIVCSHEIAASTA--------VAASKVK--ANKHSPHLSRLQECSRTVNERAANVVASTKSGQEQIEDRDTM........................................................................ 194
7 -6.350d2yjka_ a.25.1.0 (A:) automated matches {Microbacterium arborescens [TaxId: 33883]}  ali model 3D-neighbors follow..  8........................................................................................................................AAAQFLTPVV--HKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDK........................... 138
8 -6.270d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Tobacco hornworm (Manduca sexta) [TaxId: 7130]}  ali model 3D-neighbors follow..  11  6.................GNAFEEMEKHAKEFQKTFSEQFNSLVNSKNTQDFNKALKDGSDSVLQQLSAFSSSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKD--KLQAAVQTTVQESQKLAKEVASNMEETNKK------LAPKIKQAYDDFVKHAEEVQKKLHEAATK............................................................................................. 165
9 -6.250d4cy9a1 a.25.1.1 (A:4-170) automated matches {Streptomyces coelicolor [TaxId: 1902]}  ali model 3D-neighbors follow..  18........................................................................................................................RLIGVLRLR---HALNDLHLTLKHVHWNVVGPHFIAVHEMIDPQVDQVRDMADDVAERIAALAQGTPGALVAERKWDDYSIGRADAIAHLGALDVVYTGVVEGMRAAVEEAGKIDPATEDLLIGQLRDLEQ........................... 149
10 -6.180d3t9ja_ a.25.1.1 (A:) Dodecameric ferritin homolog {Helicobacter pylori, Nap [TaxId: 210]}  ali model 3D-neighbors follow..  2........................................................................................................................KTFEILKHLQADAIVLFMK--VHNFHWNVKGTDFFNVHKATEEIYEGFADMFDDLAERIAQLGHHPLVTLSEALKLTRVKEETKTSFHSFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTY.................................... 124

FFAS is supported by the NIH grant R01-GM087218-01
8 3 0 2 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.