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Query: TM0035 TM0035 281916 Purified-2001-08-24, from JCSG0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MESPRNGSSRSFGPISWQQPSDWQETPPLAFNSTGVFKGVGDGQTLNQGIGVFFIYDAGVEEALVYGLSQDASLVDQGETEWKGFKGRYYKFEGNNLSFNVQVFPLGMRDLAFWNFVAGEPADEDLKTLEKILSSIDLNDRFKFSRWNSQDGTLKIYQNGNHFEGSFGEKTLEGIVIENSIFGWWKKSDSTGSVGPSRFWDGAFSGKFVEGKLQLLFSSSEDPFYSLEGTTVTFENVSGKFESSTVEEVSVTESLLCRSVYENTPFATDTAFTPFDKRIVMWSATKPFENSHIFKWEWYDPDGNLKETVYYIVAPTIETGYDYYDSVWGWMATDRFGEDAFGEWKVVVYADGKKLDESSFKLVQEPEMKTIETETFKLNVPAYTYYQLSEGVHYFILDIANLIFAEAHYETEPLNGEVYKTPNYEVNFIETSMPDYQTGQNFIYWVVQFPEKDGQYLYMSFYAPEDDFKRLESLFERILNSVELKLast
1 -8.6303m09_A mol:protein length:161 Dihydrofolate reductase  ali model follow..  14  6VAHDLQRVIGFENQLPWHLPNDLKH-----------VKKLSTGHTLVMGRKTF--------ESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIEDIYQLPGHVFIFGGQ--TLYEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRK........................................................................................................................................................................................................................................................................................................................ 157
2 -8.5704fgg_A mol:protein length:163 Dihydrofolate reductase  ali model follow..  14  7VAHDLQRVIGFENQLPWHLPNDLKH-----------VKKLSTGHTLVMGRKTF--------ESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIEDIYQLPGHVFIFGGQ--TLFEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRKKLV..................................................................................................................................................................................................................................................................................................................... 161
3 -8.5503sgy_A mol:protein length:167 Dihydrofolate reductase  ali model follow..  14  6VAHDLQRVIGFENQLPWHLPNDLKH-----------VKKLSTGHTLVMGRKTF--------ESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIEDIYQLPGHVFIFGGQ--TLFEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRK........................................................................................................................................................................................................................................................................................................................ 157
4 -8.5104q6a_A mol:protein length:160 Dihydrofolate reductase  ali model follow..  14  7VAHDLQRVIGFENQLPWHLPNDLKH-----------LKKLSTGHTLVMGRKTF--------ESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIEDIYQLPGHVFIFGGQ--TLYEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRK........................................................................................................................................................................................................................................................................................................................ 158
5 -8.4903lg4_A mol:protein length:168 Dihydrofolate reductase  ali model follow..  14  7VAHDLQRVIGFENQLPWHLPNDLKH-----------YKKLSTGHTLVMGRKTF--------ESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIEDIYQLPGHVFIIGGQ--TLFEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRK........................................................................................................................................................................................................................................................................................................................ 158
6 -8.4605ISQ Entity 1(prereleased)  ali follow..  14  6VAHDLQRVIGFENQLPWHLPNDLKN-----------VKKLSTGHTLVMGRKTF--------ESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIEDIYQLPGHVFIFGGQ--TLYEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRK........................................................................................................................................................................................................................................................................................................................ 157
7 -8.4305HF0 Entity 1(prereleased)  ali follow..  14  6VAHDLQRVIGFENQLPWHLPNDLKH-----------VKKLSTGHTLVMGRKTF--------ESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIEDIYQLPGHVFIFGGQ--TLFEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRK........................................................................................................................................................................................................................................................................................................................ 157
8 -8.4001cyx_A mol:protein length:205 CYOA  ali model follow..  17  5..EPSKPLAHDEKPITIEVVSDWK--PEQGIATVNANTPVYFKVTSNSVMHSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGICAEICGPGHSGMKFKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFMA................................................................................................................................................................................................................................................................................................................................................... 173
9 -8.3603sqy_X mol:protein length:167 Dihydrofolate reductase  ali model follow..  14  7VAHDLQRVIGFENQLPWHLPNDLKH-----------VKKLSTGHTLVMGRKTF--------ESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIEDIYQLPGHVFIFGGQ--TLFEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRK........................................................................................................................................................................................................................................................................................................................ 158
10 -8.2902w9s_A mol:protein length:161 DIHYDROFOLATE REDUCTASE TYPE 1 FROM TN4003  ali model follow..  12  7VAHDKQRVIGYQNQLPWHLPNDLKH-----------IKQLTTGNTLVMARKTF--------ESIGKPLPNRRNVVLTNQASFHHEGVDVINSLDEIKELSGHVFIFGGQ--TLYEAMIDQVDDMYITVIDGKFQGDTFFPPYTFEDWEVESSVEGQLDEKNTIPHTFLHLVRR........................................................................................................................................................................................................................................................................................................................ 158

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.