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Query: TM0010 TM0010 281891 Purified-2005-03-03, from JCSG0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPLTTNTILICAGGACISAGEKSVKDAFEEELRKYGLDEVVRVIETGCMGACTLGPIAVIYPESVFYQKLTPDAAREIVEEHILKGRIVEKYLYKASEGKPVPRVHEEVPFFKKQVRIVTRNLGVIDPTKIEEYIARDGYFALAKALQMKPEDVIKEIKDSGLRGRGGAGFPTGLKWELAARQKAEKKFVVCNADEGDPGAFMDRSVLEGDPHAVIEGMAIAAYAIGAQKGFVYVRAEYPLAIERLNIALNQAREYGFLGGNIMGTDFSFDIEIRIGAGAFVCGEETALMASIEGERGQPKVKPPYPVEKGLWGYPTVINNVETLANVPWIIRNGAKEFRKYGTENSPGTKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGIAGDKKLKAIQTGGPSGGCIPAEYVDTPVDFESLQKLGAIMGSGGMIVMDEDDCMVDVARFFLEFTVEESCGKCTPCREGTKKMLEILEKITSGEGTEEDIEELEKLAHVVKDTSLCGLGQTAPNPVLSTLRYFRDEYLAHVKEKRCPSKKCKALISYVIDPEKCVGCTACARVCPVQCISGQVRQPHVIDQAECVRCGSCIEVCRFGAISKVTPALPVEEAVELast
1 -102.0002fug_1 mol:protein length:438 NADH-quinone oxidoreductase chain 1  ali model follow..  45  1......................................................................................................MTGPILSGLDPRFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKDDGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMKLYQISGPVKRPGVYELPMGTTFRELIYEWAGGP--LEPIQAIIPGGSSTPPLPEEVLDTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFKDQYLALAREKRPVPRPSL....................................................................... 436
2 -26.8001f37_A mol:protein length:110 FERREDOXIN [2FE-2S]  ali model follow..  29  1..AEFKHVFVCPQGSCAQRGSREVFQAFMEKIQTDPQFMTTVITPTGCMNACMMGPVVVVYPDGVWYGQVKPEDVDEIVEKHLKGGEPVERLVISKGKPPGMF........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 110
3 -19.7002vkr_A mol:protein length:103 ZINC-CONTAINING FERREDOXIN  ali model follow..  25  37...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IVGVDFDLCIADGSCITACPVNVFQASEKKADPINEQACIFCMACVNVCPVAAID............. 99
4 -19.4001k0t_A mol:protein length:80 PSAC SUBUNIT OF PHOTOSYSTEM I  ali model follow..  28  4.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VKIYDTCIGCTQCVRACPLDVLEKAGQIASSPRTEDCVGCKRCETACPTDFLS............. 63
5 -19.2001xer_A mol:protein length:103 FERREDOXIN  ali model follow..  23  37...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IVGVDFDLCIADGSCINACPVNVFQASEKKADPVNEQACIFCMACVNVCPVAAID............. 99
6 -19.2004kt0_C mol:protein length:81 Photosystem I iron-sulfur center  ali model follow..  26  1.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MSHSVKIYDTCIGCTQCVRACPLDVLEKAAQIASSPRTEDCVGCKRCETACPTDFLS............. 64
7 -19.0001jb0_C mol:protein length:80 PHOTOSYSTEM I IRON-SULFUR CENTER  ali model follow..  28  4.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VKIYDTCIGCTQCVRACPTDVLEKAGQIASSPRTEDCVGCKRCETACPTDFLS............. 63
8 -18.9002wsc_C mol:protein length:81 PHOTOSYSTEM I IRON-SULFUR CENTER  ali model follow..  28  5.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VKIYDTCIGCTQCVRACPTDVLEKAKQIASAPRTEDCVGCKRCESACPTDFLS............. 64
9 -16.5001fdn_A mol:protein length:55 FERREDOXIN  ali model follow..  37  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YVINEACISCGACEPECPVNAIS-SGDDRYVIDADTCIDCGACAGVCPVDAPVQ............ 54
10 -16.3001fca_A mol:protein length:55 FERREDOXIN  ali model follow..  39  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YVINEACISCGACEPECPVDAIS-QGGSRYVIDADTCIDCGACAGVCPVDAPVQ............ 54
11 -15.9001clf_A mol:protein length:55 FERREDOXIN  ali model follow..  43  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YKIADSCVSCGACASECPVNAIS-QGDSIFVIDADTCIDCGNCANVCPVGAPVQ............ 54
12 -15.5001dur_A mol:protein length:55 2[4FE-4S] FERREDOXIN  ali model follow..  39  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YVINDSCIACGACKPECPVNCIQ--EGSIYAIDADSCIDCGSCASVCPVGAPN............. 52
13 -14.6001jnr_B mol:protein length:150 adenylylsulfate reductase  ali model follow..  33  1..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MPSFVNPEKCDGCTACEYICPNDLMTKEKMKAYNREPDMCWECYSCVKMCPQGAID............. 63
14 -13.4004z3w_E mol:protein length:179 Iron-sulfur cluster-binding oxidoreductase, p  ali model follow..  21  18...................................................................................................................................................................................................................................................................................................................................................................................................................................................................DKCNGCRACEVI------------------------------------CSAFHAMPNPARSRVRVVRDPLRDILYAGEYTESECIGRDKFIIDGKEYDECGFCRASCPSRDLFREPDSGLP---LKCDLCDLCVKWCLVGALS............. 134
15 -13.2003gyx_B mol:protein length:166 Adenylylsulfate Reductase  ali model follow..  37  3.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YVDPSKCDGCTACMYICPNDLMDPEEMKAFNQEPEACWECYSCIKICPQGAIT............. 62
16 -13.0002auv_A mol:protein length:85 potential NAD-reducing hydrogenase subunit  ali model follow..  29  6....KYPISVCMGTACFVKGADKVVHAFKEQLKDVTPDGRFSIDTLRCVGGCALAPIVMV--GEKVYGNVTPGQVKKILAEY............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 85
17 -12.8002fug_9 mol:protein length:182 NADH-quinone oxidoreductase chain 9  ali model follow..  26  12..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ITLKYLFSKPVTVPYPDAPVALKP-HVLTRHPNGLEKCIGCSLCAAACPAYAIYVEPAEVYEINMLRCIFCGLCEEACPTGAIVLGY.......... 117
18 -12.7001bc6_A mol:protein length:77 7-FE FERREDOXIN  ali model follow..  38  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YVITEPCIGTASCVEVCPVDCIH-EGEDQYYIDPDVCIDCGACEAVCPVSAI.............. 54
19 -12.6001bqx_A mol:protein length:77 PROTEIN (FERREDOXIN)  ali model follow..  38  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YVITEPCIGTASCVEVCPVDCIH-EGEDQYYIDPDVCIDCGACEAVCPVSAI.............. 54
20 -12.2001h98_A mol:protein length:78 FERREDOXIN  ali model follow..  36  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................HVICEPCIGVQSCVEVCPVECIY-DGGDQFYIHPEECIDCGACVPACPVNAI.............. 54
21 -11.6001rgv_A mol:protein length:80 ferredoxin  ali model follow..  26  3..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YINDDCTACDACVEECPNEAIT-PGDPIYVIDPTKCSEC-QCRLVCPADCIPDNPDYRETREE.. 70
22 -11.5002v2k_A mol:protein length:105 FERREDOXIN  ali model follow..  40  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YVIAEPCVDVKACIEECPVDCIY-EGARMLYIHPDECVDCGACEPVCPVEAI.............. 54
23 -11.4002fgo_A mol:protein length:82 Ferredoxin  ali model follow..  26  3..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KITDDCINCDVCEPECPNGAIS-QGEEIYVIDPNLCTEC-QCQQVCPVDCIPLDDANVESKDQ.. 70
24 -11.4003eun_A mol:protein length:82 Ferredoxin  ali model follow..  31  3..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MITDECINCDVCEPECPNGAIS-QGDETYVIEPSLCTEC-QCVEVCPVDAIIKDPSHEETEDE.. 70
25 -11.4001blu_A mol:protein length:82 FERREDOXIN  ali model follow..  30  3..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MITDECINCDVCEPECPNGAIS-QGDETYVIEPSLCTEC-QCVEVCPVDCIIKDPSHEETEDE.. 70
26 -11.4003exy_A mol:protein length:82 Ferredoxin  ali model follow..  30  3..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MITDECINCDGCEPECPNGAIS-QGDETYVIEPSLCTEC-QCVEVCPVDCIIKDPSHEETEDE.. 70
27 -11.4001ff2_A mol:protein length:106 FERREDOXIN I  ali model follow..  32  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FVVTDNCIKCTDCVEVCPVDCFY-EGPNFLVIHPDECIDDALCEPECPAQAI.............. 54
28 -11.3002fd2_A mol:protein length:106 FERREDOXIN  ali model follow..  32  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FVVTDNCIKCTDCVEVCPVDAFY-EGPNFLVIHPDECIDCALCEPECPAQAI.............. 54
29 -11.3001fd2_A mol:protein length:106 FERREDOXIN  ali model follow..  32  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FVVTDNCIKCTDCVEVAPVDCFY-EGPNFLVIHPDECIDCALCEPECPAQAI.............. 54
30 -11.2001b0v_A mol:protein length:106 PROTEIN (FERREDOXIN)  ali model follow..  34  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FVVTDNCIKCTDCVEVCPVDCFY-EGPNFLVIHPDECNDCALCEPECPAQAI.............. 54
31 -11.2001a6l_A mol:protein length:106 FERREDOXIN  ali model follow..  32  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FVVTDNCIKCCDCVEVCPVDCFY-EGPNFLVIHPDECIDCALCEPECPAQAI.............. 54
32 -11.2001frk_A mol:protein length:106 FERREDOXIN  ali model follow..  36  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FVVTDNCIKCTDCVEVCPVDCFY-EGPNFLVIDPDECIDCALCEPECPAQAI.............. 54
33 -11.2001fri_A mol:protein length:106 FERREDOXIN  ali model follow..  34  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FVVTDNCIKCTDCVEVCPVNCFY-EGPNFLVIHPDECIDCALCEPECPAQAI.............. 54
34 -11.2001frm_A mol:protein length:106 FERREDOXIN  ali model follow..  34  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FVVTDNCIKCTDCVEVCPVDCFY-EGPNFLVIHPDECIDCALCAPECPAQAI.............. 54
35 -11.2001frl_A mol:protein length:106 FERREDOXIN  ali model follow..  32  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FVVTDNCIKCTDCVEVCPVDCFY-EGPNFLVIHPDSCIDCALCEPECPAQAI.............. 54
36 -11.2001f5b_A mol:protein length:106 FERREDOXIN 1  ali model follow..  34  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................HVVTDNCIKCTDCVEVCPVDCFY-EGPNFLVIHPDECIDCALCEPECPAQAI.............. 54
37 -11.2001ftc_A mol:protein length:106 FERREDOXIN  ali model follow..  34  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FVVTDNCIKCTDCVEVCPVDCFY-EGPNFLVIHPDECIDCALCEPECPAQAI.............. 54
38 -11.1001d3w_A mol:protein length:106 FERREDOXIN 1  ali model follow..  34  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FVVTDNCIKCTECVEVCPVDCFY-EGPNFLVIHPDECIDCALCEPECPAQAI.............. 54
39 -11.1001b0t_A mol:protein length:106 PROTEIN (FERREDOXIN I)  ali model follow..  34  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FVVTDNCIKCTKCVEVCPVDCFY-EGPNFLVIHPDECIDCALCEPECPAQAI.............. 54
40 -11.1001g6b_A mol:protein length:106 7FE FERREDOXIN I  ali model follow..  34  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FVVTDNCIKCTDCVEVCPVDCFY-EGPNFLVIHPDECIDCALCESECPAQAI.............. 54
41 -11.1001f5c_A mol:protein length:106 FERREDOXIN 1  ali model follow..  34  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FVVTDNCIKCTDCVEVCPVDCHY-EGPNFLVIHPDECIDCALCEPECPAQAI.............. 54
42 -11.1001gao_A mol:protein length:106 FERREDOXIN I  ali model follow..  36  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FVVTDNCIKCTDCVEVCPVDCFY-EGPNFLVIHPDECIDCASCEPECPAQAI.............. 54
43 -11.1001g3o_A mol:protein length:106 7FE FERREDOXIN I  ali model follow..  32  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FVVTDNCIKCTDCVEECPVDCFY-EGPNFLVIHPDECIDCALCEPECPAQAI.............. 54
44 -11.0001pc4_A mol:protein length:107 Ferredoxin I  ali model follow..  34  3.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FVVTDNCIKCTDCVEVCPVDCFY-EGPNFLVIHPDECIDCALCEPECAAQAI.............. 55
45 -10.8002zvs_A mol:protein length:85 Uncharacterized ferredoxin-like protein yfhL  ali model follow..  26  3..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LITKKCINCDMCEPECPNEAIS-MGDHIYEINSDKCTEC-TCQKVCPIPNTIVKDPAHVETEEQ. 71
46 -9.8101h0h_B mol:protein length:214 FORMATE DEHYDROGENASE SUBUNIT BETA  ali model follow..  14  5...............................................................................................................................................................................................................................................................................................................................................................................................................................................................FVDTTRCTACRGCQVACKQWHGNPATPTENTGFHQNPPDFNF-----HTYKLVRMHEQEIDGRIDWL--FFPDQCRHCIAPPC-KATATGCVLFTPKTKDLEDYESVISACPYDVPRKVAESNQM---AKCDMC-ACVTSCPTGAMN............. 162
47 -9.6704ras_A mol:protein length:704 Oxidoreductase, NAD-binding/iron-sulfur clust  ali model follow..  11  58....................................................................................................................................TRFLDGPVAPLGDAIPDDPARRAENLKASAYFDASMVGICRLDPDDRAGDCDPSHTHALVFAVQFGAGAEWIRGTNAARTDMRCAEIAAILSGYVRWMGF--ARGHFSGDAQVDLARLAVRAGLARVVDGLVAPFLRRGFRLGVVTTGYALAADRPLAPEGDLGETAPEVMLGIDGTRPGWEDAEEEKRPLHMGRYPMETIRRVD-RQEIQRVAKRGDFFKRAEAGDLGEKAKQEKKRFPMKHPLALGMQPLIQNMVPLQGTREKLAPTGKGGDLSDPGRNAEAIKALGYYLGADGICRAEP----------WMYYASDEVEGKPIEAYHDYAVVMLIDQGYETMEGASGD-AHCRRMGYSARSILMAGLGEVSRIGDTLLNPFIGPRSKSIVFTTDLPMSVDRPI------QDFCNQCRKCARECPCNAISFGDKEIWKADVEKCTKCGRCMKMCPWNR............... 572
48 -9.5405c4i_B mol:protein length:315 Oxalate oxidoreductase subunit delta  ali model follow..  14  20.....................................................................................................................................................................................................................................................................................................................RGVVMNKDARDIVVALTEAAAKEGKYVQAWENYVDLPDRYVPVRAYARISSDPIESKYIYENETPDIVVLVEESLIKGVP---ILKGIRPGSTL---VVNTKRSIDTILEFLGDTGNLAIVTVDANSMAEAVMTLSGAEGATDATGIGAGIAAPIAGAVVKATGIVDVENLAAVVKNPAAMRRGYAEAQVRQLPPHEAVEEAAVSATELLRQMPFAGTVPSPVTENEGMVT-IIDREACTECYTCWIYCPDSCITRTEEGP-VFNMKYCKGCGLCTAVCPSGALTNVP.......... 309
49 -9.0001za3_R mol:protein length:134 Tumor necrosis factor receptor superfamily me  ali model follow..  20  38.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ISEDGRDCISCKYG------------------QDYSTHWNDLLFCLRCTRCDSGEVELSPCTTT------------RNTVC---QCEE--GTFREEDSPEMCRKCRTGCPRG--MVKVGDCTPWSDIECVHKES........................ 134

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.