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HGC00311
Query: HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;, from HGM_OVER

Results of FFAS03 search in SCOP175
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAKPKNLEQLRAEKEQVETQLAQEQHKLKRLENRKKYLEKGERQKRTHRLCNLGGTIESLAPEFKDLTRTEMTELMEYIFSLPEVQRAVRHMAITHINQASRGKEQKADGNIPLHRHPDQTQLast
1 -5.940d1o8ra_ d.234.1.1 (A:) Proguanylin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  13...............ESVKKLKDLQEPQEPRVGKLRNFAPIPGEPVVPILCSNPNFPEELKPLCKEPNAQEILQRLEEIAEDPGTCEICAYAA............................. 90
2 -5.590d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  11  5......LNKMFDPTKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFLEKGATTDDLLVEAFAVVREASRRVT.............................................. 77
3 -5.200d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  2....QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNR............................................................................ 43
4 -5.010d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  107....GQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYF.......................................... 182
5 -4.940d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}  ali model 3D-neighbors follow..  10  16...KIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQPQ........................................................... 75
6 -4.910d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  2.....RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQR............................................................................ 42
7 -4.810d1m70a1 a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}  ali model 3D-neighbors follow..  35.........................QGERYLLKQLQDIKAGSTPGAPEGVGRKVLEMTGML---DPLSDQDLEDIAAYFSSQK....................................... 89
8 -4.630d1lc0a2 d.81.1.4 (A:129-246) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  14  2....EEFEFLRREVLGKELLKGSLRFTASPLEEERFGFPAFSGISRLTWLVSLFGELSLISATLEERKEDQYMKMTVQL........................................... 76
9 -4.450d1hy5a_ a.24.11.1 (A:) YopE {Yersinia pestis [TaxId: 632]}  ali model 3D-neighbors follow..  13  2..............SFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLCGGELQAEASAILNTP....................................... 73
10 -4.450d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  19  121TFANKDLRLTEDEVSRAKNQL-----KSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNAGN................................. 204

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab

Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.