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Query: HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;, from HGM_OVER

Results of FFAS03 search in SCOP206
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAKPKNLEQLRAEKEQVETQLAQEQHKLKRLENRKKYLEKGERQKRTHRLCNLGGTIESLAPEFKDLTRTEMTELMEYIFSLPEVQRAVRHMAITHINQASRGKEQKADGNIPLHRHPDQTQLast
1 -5.690d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  11  5......LNKMFDPTKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFLEKGATTDDLLVEAFAVVREASRRVT.............................................. 77
2 -5.410d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  2....QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKN-QRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVID............................................. 75
3 -5.390d1o8ra_ d.234.1.1 (A:) Proguanylin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  13...............ESVKKLKDLQEPQEPRVGKLRNFAPIPGEPVVPILCSNPNFPEELKPLCKEPNAQEILQRLEEIAEDPGTCEICAYAA............................. 90
4 -5.180d2wdsa_ d.150.1.0 (A:) automated matches {Streptomyces coelicolor [TaxId: 1902]}  ali model 3D-neighbors follow..  22  12............EVERFGAALERTPALAGRLFLESELLLPGGERRGVASLAARFAAKEALAK............................................................ 61
5 -4.960d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  2.....RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQR............................................................................ 42
6 -4.870d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  15  2.....TLKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKELDRKREEEVLRRAGEFREIFEKILEVSKD.................................................... 71
7 -4.830d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  16  2..VTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFD................................................................................... 38
8 -4.700d1m70a1 a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}  ali model 3D-neighbors follow..  35.........................QGERYLLKQLQDIKAGSTPGAPEGVGRKVLEMTGML---DPLSDQDLEDIAAYFSSQK....................................... 89
9 -4.670d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  20  121TFANKDLRLTEDEVSRAKNQL-----KSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGN....................................... 198
10 -4.630d2a06a2 d.185.1.1 (A:234-443) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  107....GQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYF.......................................... 182

FFAS is supported by the NIH grant R01-GM087218-01
8 5 8 4 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zmasek CM, Zhang Q, Ye Y, Godzik A. Surprising complexity of the ancestral apoptosis network. Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]