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Query: HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411;, from HGM_OVER

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLKENQGYVIRRTILFDNQCGFALGENSRAPNPFVTWQFNGQDGHRDYFWGHYMNEPDMAERDLLNRARDYQRRYHVEEVEQAPDKETYLYYSTQRPIDIGTYPNSYFNRPVHMDLYFTRQQVTGEIFQAWGAITYAHPLTEREMQDYELRPSRNNLDIRRQMDAQAQVVGKWEDAHHVPDQKRLTWFYPDFGSYVVKEYVTPDQLAVRVRSIERQEAARAHKEAKRQPPIAEQLKAAQREAQGHRGPELPKRSPLast
1 -7.300PF10278.7; A7RLX2_NEMVE/18-205; Mediator of RNA pol II transcription subunit 19  ali follow..  15  80.........................................................................................................................................LPLPSHALSGFRLNPGPI-PEQFRFMTQQPTKKKHKHKKHKSQDGERAKSLVDTVIATGLPGQPSPADSKLDGGHERKHKKQKKHDDGERKKKKKDK-KKKKRHTPDPVGP....... 188
2 -6.850PF04930.13; B4MV38_DROWI/23-132; FUN14 family  ali follow..  10  11.....TGFVLLK---VGKMVAVSIG------GSILIFELAMQSGIIKTDWNRVLDNRSNRGLAAIQNTGASNARVRGIELDTSDQDQLKNKVKK................................................................................................................................................................. 90
3 -6.760PF13897.4; C3ZQJ8_BRAFL/353-482; Golgi-dynamics membrane-trafficking  ali follow..  1...............VGRGEVVTVRVPTHEDGAYLFWEFATDSYDIGF--GVYFEWTIAPSNAVSVHVSESSDEDDEEEDEGQDVEKGARS------------DRPPTDEIVPIYRRDCHVEVYAGSHMY-GVLKFDNSYSRSKTLYYRVY........................................................................................................ 128
4 -6.670PF15420.4; V9XMZ3_9NOCA/58-271; Alpha/beta-hydrolase family N-terminus  ali follow..  15  164YAIVNQAFGLEDDTTRPGAIQPVDPAKSGSPESLAAWETLGFEGRNFVSRG............................................................................................................................................................................................................ 214
5 -6.280PF02714.13; Q6CTP0_KLULA/391-664; Calcium-dependent channel, 7TM region, putative phosphate  ali follow..  10  99.......FQVVQVVTLASSASSTVTDIIDEPDSAMTLLAQNLPKASNFYIAYFLLQGLTVPSGALLQVVALILSKVLGRVLDKTPRQKWARYNTLSQPSWGVYPVLELLVCIFITYSIIAPIILVFSTVALGFLAYLYNLTYVMSFSYD.......................................................................................................... 246
6 -6.260PF12604.6; FIBER_BPT7/358-522; Tail fibre protein gp37 C terminal  ali follow..  14  1.....QGGAMTGQLKLQNGHVLQLESASDKAHYIL----SKDGNRNNWYIG............................................................................................................................................................................................................ 42
7 -6.200PF06227.10; Q08FJ5_DPV83/1-130; dsDNA Poxvirus  ali follow..  10  2......DEFIYIDTTVEKNIVDIL-------KYYITWRGSSDFYDKH---GKIFKKLMLFDDNARKIMGD......................................................................................................................................................................................... 57
8 -6.190PF02794.14; Q9JZB0_NEIMB/24-149; RTX toxin acyltransferase family  ali follow..  21  25.......VNILPVLKNG---QFALFSSNGHPVAYCTWAYFDEETEWQY............................................................................................................................................................................................................... 62
9 -6.140PF16761.3; R4XBL7_TAPDE/70-138; Transcription-silencing protein, cryptic loci regulator Clr2  ali follow..  14  4...........................ADFPENYTLLEHNKYQGEGKYLYGHPSGSRFRSINEFIPHM........................................................................................................................................................................................... 50
10 -6.140PF01491.14; M0RY72_MUSAM/83-191; Frataxin-like domain  ali follow..  18  41..........VLTLKLGSLGTYVI--NKQTPNRQI-WLSSPVSGPSRFDW............................................................................................................................................................................................................. 77

FFAS is supported by the NIH grant R01-GM087218-01
8 5 6 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.