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HGC00429
Query: HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411;, from HGM_OVER

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLKENQGYVIRRTILFDNQCGFALGENSRAPNPFVTWQFNGQDGHRDYFWGHYMNEPDMAERDLLNRARDYQRRYHVEEVEQAPDKETYLYYSTQRPIDIGTYPNSYFNRPVHMDLYFTRQQVTGEIFQAWGAITYAHPLTEREMQDYELRPSRNNLDIRRQMDAQAQVVGKWEDAHHVPDQKRLTWFYPDFGSYVVKEYVTPDQLAVRVRSIERQEAARAHKEAKRQPPIAEQLKAAQREAQGHRGPELPKRSPLast
1 -7.600PF12876.2; Q73YI5_MYCPA/185-277; Sugar-binding cellulase-like  ali follow..  10  1......................VLAQFRTDDR-ILGWDLWNEPDNPADAYASERTDKLDRVAELLPQVFAWARSV-----------------DPCQPLTSGVWQGADPAISGIQDNSD......................................................................................................................................... 78
2 -7.150PF06227.7; Q08FJ5_DPV83/1-130; dsDNA Poxvirus  ali follow..  11  2......DEFIYIDTTVEKNIVDIL-------KYYITWRGSSDFYDKH---GKIFKKLMLFDDNARKIMGDYDYLFIKNMNLSLDD.......................................................................................................................................................................... 72
3 -6.990PF10278.4; A7RLX2_NEMVE/18-205; Mediator of RNA pol II transcription subunit 19  ali follow..  10  80.........................................................................................................................................LPLPSHALSGFRLNPGPIPEQFRFMTQQPTKKKHKHKKHKSQDGERAKSLVDTVIATGLPGQPSPADS---------KLDGGHERKHKKQKKHDDGERKKKKKDKKKKKRHTPDPVGP 188
4 -6.320PF13897.1; C1BX34_ESOLU/132-267; Golgi-dynamics membrane-trafficking  ali follow..  1...............VYRGDIMTVHVPTVPEGKRVCWEFATDNYDIGF--GIYFDWTPVTCRAITVHISESSDDEDEEDEIEAPANTPVYRQDSHLAVQGGSHEYPGEG--TYLLKFDNSYSLWRNKT-----LYYRVYYS.................................................................................................................. 136
5 -6.150PF07960.6; CBP4_CANAL/4-139; CBP4  ali follow..  10  31.........................................................................................................................................................PTDEQLIARFSPEVKADYERNKELRQQEQKRLIEIVKETSSSSDPIWKAGPIGSPFEKEQRNLSMELVDAELFHKTKHEEQQKQENEESKEAERLMQQNKKP 136
6 -5.900PF02282.11; PAP_EHV1B/34-184; DNA polymerase processivity factor (UL42)  ali follow..  13  23........SLKNAFLIFNEDGLLIHTSVGGEQVYIP----QTNNMESYSWKKAPPAVFLANVDGRRGLLDAFKAKTQTNVSKVVFEIE------------NYSPSRILTQTVFSARDQTEEDTEMGSDAEGATQTVSSRLVKHEFNNYALM........................................................................................................ 150
7 -5.900PF10510.4; A8E4X4_XENTR/21-559; Phosphatidylinositol-glycan biosynthesis class S protein  ali follow..  11  210.FKSSAGYEIT----------FSL--NPDPKSHDLNWNISSA---------QYIQPFLDKLQNVANSMDSQTLYYAMLGVTPRFEKSTSSYILNLHNLP---VPEYSHSPLYIQDKDGSRIPTNAFHSPRWGGIMYNVDYGNLGELQFPVHIDIDMVRVMEVFLTQLRLLLGITKATVPEDYQLESPGNEGLTDWELDRLLWSRVVENIATVTTTLTSLAQLLDQIGNIVINDIVASEVYHAVS........... 459
8 -5.780PF05821.6; A4FVE9_XENLA/6-188; NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)  ali follow..  13  46.ATAAKKYNMREDYEPYPDDGMGFGDYPKLPDPWYTW------------------DHPDLRRNWGEPIQWDFDMYTRNRVDTSPTALPWNKYPVYPPVAPKQYPYN------------------NLYLERGG----DATKDPPDVKNYEF......................................................................................................... 183
9 -5.610PF01270.12; GUNY_DICD3/1-332; Glycosyl hydrolases family 8  ali follow..  13  50SHTEGQGFAMLMAVHYDDRIAFTQSHLRNTTSGLFYWRYDPSDGDVLIAWALLKAGNKWQDNRYLQASDSIQKAIIASNIIQFAGRT........................................................................................................................................................................ 154
10 -5.560PF02794.11; Q9JZB0_NEIMB/23-153; RTX toxin acyltransferase family  ali follow..  21  26.......VNILPVLKNG---QFALFSSNGHPVAYCTWAYFDEETEWQY............................................................................................................................................................................................................... 63

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.