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Query: HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;, from HGM_OVER

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDEKEVSEMQEEMMTVLVVEPMKAPYVKHIPNELEDLQQAVGGDIEMTYPFDDEVGILLNGNGKFEGLPLNRALYDDHGQVYDAIAGTFLVVGLTEDDFTSLTPEQIEKFKEKYQSPEIFTLFNGELHVMKMPPEEEKEQKESRKNDAKQKNPAKKKNRSGDARLast
1 -7.8801o58_A mol:protein length:303 O-acetylserine sulfhydrylase  ali model follow..  15  182...RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSDEVITVEDEEA----YEMARYLAKKEGLLVGISSGANVAAALPDARVVTVAPDHAERYLSIL.................................................. 297
2 -7.7501ve1_A mol:protein length:304 O-acetylserine sulfhydrylase  ali model follow..  18  188.......KERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSDGVIQVWEEDA----FPLARRLAREEGLFLGMSSGGIVWAALPGKRVACISPDGGWKYTPLYAEP............................................... 304
3 -6.7502f0x_A mol:protein length:148 Thioesterase superfamily member 2  ali model follow..  12  26...........GKITLVSAAPGKVICEMKVEEETNAIGTLHGGLTATLVDNISTMALLCTERGA---------------PGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLFTSVDLTNKATGKLIA................................... 130
4 -6.6702egu_A mol:protein length:308 Cysteine synthase  ali model follow..  14  191.......REAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSDGVITVTTEEA----FAAARRAAREEGILGGISSGAAIHAALKGKKVLAIIPSNGERYTPLYQFED.............................................. 308
5 -6.6101z7w_A mol:protein length:322 Cysteine synthase  ali model follow..  18  194.......KEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDDEVVQVSSDES----IDMARQLALKEGLLVGISSGAAAAAAIKPENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTFEA.............................. 322
6 -6.6102h4u_A mol:protein length:145 Thioesterase superfamily member 2  ali model follow..  12  25...........GKITLVSAAPGKVICEMKVEEETNAIGTLHGGLTATLVDNISTMALLCTERGAP----------------VSVDMNITYMSPAKLGEDIVITAHVLKQGKTLFTSVDLTNKATGKLIA................................... 129
7 -6.5902k2q_B mol:protein length:242 Surfactin synthetase thioesterase subunit  ali model follow..  13  37..........QGECEMLAAEPGHGTNQTSAIEDLEELTDLYKQELNLR--PDRPFVLFGHSMGGMITFRLAQKLEREGIFPQAVIISAIQPPHIQRKKVSHLPDDQFLDHIIQLGGMPAELVENKEVMSFFLP............................... 158
8 -6.4803zih_A mol:protein length:95 CELL DIVISION PROTEIN SEPF  ali model follow..  18  1........SVQKSSKVVLSEPRVYAEAQEIADHLKNRRAVV........................................................................................................................... 33
9 -6.4504air_A mol:protein length:354 CYSTEINE SYNTHASE  ali model follow..  15  214.......KKMGSHARIVAVEPMESPVLSGGKPGAHKIQGIGPGFVPDVLDRSDEVFCVAGDDA----IETALKLTRSDGVFCGFSGGANVYAALKPEMEGKTIVTIIPSFGERYLSTALYRSVRDEVSSLPVVDASELQD........................ 348
10 -6.4503zii_A mol:protein length:95 CELL DIVISION PROTEIN SEPF  ali model follow..  18  1........SVQKSSKVVLSEPRVYAEAQEIADHLKNRRAVV........................................................................................................................... 33

FFAS is supported by the NIH grant R01-GM087218-01
8 5 6 4 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.