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Query: HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;, from HGM_OVER

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst LLGITNVPDKKNYAIDELGLSAQAARNLYAGKANAQVVNYLLESPRFLDLTYILEQYFNDTVAAGYAAQNQLYTTISSLTRKTVKTEAGEQAARDIAHLRTSVYQADLVTIENQFMLAVKEVKKEIGNDFAAMQSMTAEAAKRMFTEVAKGQDMTNPTITPEQVSDLIYRSVAGLDGCHRDALNTLGQALTGFFQNHLRAAQYRRKAMKRQDNEQLCALAQKGTQSSLast
1 -7.5902c41_A mol:protein length:158 DPS FAMILY DNA-BINDING STRESS RESPONSE PROTEI  ali model follow..  1.MSATTTLKEQVLTTLKREQANAVVMYLNYKKYHWLTYGPLF-HLLFEEQGSEVFAMIDELAERSLMLDGQPVADPADYL----------KVATVTPSSGQLTVKQMIEEAIANHELIITEMHQDAEIATEAGDIGTADLYTRLVQTHQK............................................................................. 141
2 -7.3902fjc_A mol:protein length:156 Antigen TpF1  ali model follow..  3.PGVPDARAIAAI-CEQLRVADLGVLYIKLHNYHWHIYGIEF-HELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSA---------LARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGK............................................................................. 145
3 -7.3601umn_A mol:protein length:165 DPS-LIKE PEROXIDE RESISTANCE PROTEIN  ali model follow..  8.SFSPRPSLADSKAVLNQAVADLSVAHSILHQVHWYMRGRMIWHPKMDEYMEEIDGYLDEMSERLITLGGAPFSTLKEFS--------ENSQLKEVLGDYNVTIEEQLARVVEVFRYLAALFQKGFDVSDEEGDSVTNDIFNVAKASIEK............................................................................. 150
4 -7.2202chp_A mol:protein length:153 METALLOREGULATION DNA-BINDING STRESS PROTEIN  ali model follow..  14  3.TENAKTNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHF-HEKFEELYDHAAETVDTIAERLLAIGGQPVATVKEYT----------EHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLAEENQDNATADLFVGLIEEVEK............................................................................. 143
5 -7.1603ge4_A mol:protein length:173 DNA PROTECTION DURING STARVATION PROTEIN  ali model follow..  12  14..DLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPIAVHEMLDGFRAELDDHVD-TIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDH--------LVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDK............................................................................. 154
6 -7.1502cf7_A mol:protein length:165 DPR  ali model follow..  8.SFSPRPSLADSKAVLNQAVADLSVAHSILHQVHWYMRGRMIWHPKMDEYMEEIDGYLAEMSERLITLGGAPFSTLKEFS--------ENSQLKEVLGDYNVTIEEQLARVVEVFRYLAALFQKGFDVSDEEGDSVTNDIFNVAKASIEK............................................................................. 150
7 -7.0802pyb_A mol:protein length:151 Neutrophil activating protein  ali model follow..  10  1.....DDLDAIQLKLQEL-LASLHIFYSNLRGIHWNIKDTNF-HKKTQKLYEYIEKIIDIVAER--------SRMLGYDSEFRYSEFMKKSFIKELDIESTSNFLPSMESIVCSLTEILKNIFGMRKLIDTAGDYGTANIMDDIMSDLEK............................................................................. 138
8 -6.6702xgw_A mol:protein length:199 PEROXIDE RESISTANCE PROTEIN  ali model follow..  34.SKKEASKNEKTKAVLNQAVADLSVAASIVHQVHWYMRGPLYLHPKMDELLDSLNANLDEVSERLITIGGAPYSTLAEFS--------KHSKLDEAKGTYDKTVAQHLARLVEVYLYLSSLYQVGLDITDEEGDAGTNDLFTAAKTEAEK............................................................................. 176
9 -6.6402d5k_A mol:protein length:156 Dps family protein  ali model follow..  10  1...MASNQQDVVKELNQQ-VANWTVAYTKLHNFHWYVKGPNF-HVKFEELYNEASQYVDELAERILAVGGNPVGTLTECL----------EQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDK............................................................................. 138
10 -6.6402c2f_A mol:protein length:207 DNA-BINDING STRESS RESPONSE PROTEIN  ali model follow..  51.HYLEEKEFQTVAETLQRNLATTISLYLKFKKYHWDIRGRFF-HLAYDEFIAEIFPSIDEQAERGGSPLAAPADLARYSTVQVPQET-------------VRDARTQVADLVQDLSRVGKGYRDDSQACDEANDPVTADMYNGYAATIDKIRWMLQAIMDDERL............................................................... 206

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.