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anford Burnham Prebys Medical Discovery Institute

Query: sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 1-300), from H.sapiens

Results of FFAS03 search in SCOP206
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSRGAGALQRRTTTYLISLTLVKLESVPPPPPSPSAAAVGAPGARGSEPRDPGSPRGAEEPGKKRHERLFHRQDALWISTSSAGAGGAEPPALSPAPASPARPVSPAPGRRLSLWAAPPGPPLSGGLSPDSKPGGAPSSSRRPLLSSPSWGGPEPEGRTGGGVPGSSSPHPGTGSRRLKVAPPPPAPKPCKTVTTSGAKAGGGKGAGSRLSWPESEGKPRVKGSKSSAGTGASVSAAATAAAAGGGGSTASTSGGVGAGAGARGKLSPRKGKSKTLDNSDLHPGPPAGSPPPLTLPPTPSLast
1 -5.170d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  20  1MPR-GYPKDQKAA--LKALGLRRLQQERVLEDTPA......................................................................................................................................................................................................................................................................... 42
2 -4.120d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  21  1MKQGNGQLGRRQAGEPLGIAVWPVGLDAEPAAVPFQQS...................................................................................................................................................................................................................................................................... 44
3 -3.950d2zy9a3 f.57.1.1 (A:276-449) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  16  49LGTGGNTGNQSATLIIRALATRDLD................................................................................................................................................................................................................................................................................... 73
4 -3.850d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  12  50LGTGVGRNIKIAGIRAAENALRDKK................................................................................................................................................................................................................................................................................... 74
5 -3.800d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}  ali model 3D-neighbors follow..  47  13.....GALVFTLGIYLGLLKVVKL.................................................................................................................................................................................................................................................................................... 31
6 -3.580d1auua_ b.35.2.1 (A:) SacY {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  24LGAGIA-FNKKKNDIVDPSKIEKT.................................................................................................................................................................................................................................................................................... 46
7 -3.470d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  26  20...GGGEVGLTRLYKLMPLTLVSPDLHKS............................................................................................................................................................................................................................................................................... 49
8 -3.420d1x48a1 d.50.1.1 (A:8-82) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  17  42YGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTAGT.......................................................................................................................................................................................................................................................................... 75
9 -3.370d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  16  45IATGKGRTKKEAEKEAARIAYEKL.................................................................................................................................................................................................................................................................................... 68
10 -3.290d3dine_ f.17.6.2 (E:) SecG {Thermotoga sp. [TaxId: 126740]}  ali model 3D-neighbors follow..  23  37.RRKGLDTGGKITLVLSVLFFV...................................................................................................................................................................................................................................................................................... 57

FFAS is supported by the NIH grant R01-GM087218-01
9 6 8 0 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jambon M, Godzik A. New avenues in protein function prediction. Protein Sci. 2006 Jun;15(6):1527-9.