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Query: sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1, from H.sapiens

Results of FFAS03 search in SCOP175
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGICIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTALKILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAAKGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIFLDGYVPTENLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEFELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKSTGSVRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDDLast
1 -37.200d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  15  1.........................................................................................................................................................................................................................................................................................................................................................SKLEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAKNEIMDALESVEVLDLKKK-LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE----ELSYCDVNENLHKY............................................................. 198
2 -36.500d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  17  2............................................................................AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI----VTVFGKNVVEEPHEVRKLISYLPEEAG------RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIH-----NGTIVETGTVEELKERYKAQNIEEVFEEVVK................................................................................................................................................................................................................................................................................. 238
3 -36.400d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  22  8.....................................................................................DVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQ-----GQPLEAWSATKLALHRAYLSQQQTPPF---------ATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGKMLASGRREEVLTPPNLAQAY............................................................................................................................................................................................................................................................................................... 229
4 -34.600d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  17  1..........................................................................MVRIIVKNVSKVFKKGKVLDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQT----WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRGVTLLVVSHDPADIFAIADRVGVLVK-----GKLVQVGKPEDLYDNPVSIQVAS........................................................................................................................................................................................................................................................................................ 239
5 -34.600d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  24  6...............................................................................................................................................................................................................................................................................................................................................................RAEKRLGNFRLNVD-----GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGALPPERRGIGFVPQDYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE--KGKLKELFSAKNGEVAEF..................................... 225
6 -33.500d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  18  1...........................................................................NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIRDKDGQLKVADKNQLRLLRTRLTMVFQH--NLWSHMTVLENVMEAPIQVLG--LSKHDARERALKYLAKVGIDERAQGKPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQ-----GKIEEEGDPEQVFGNPQSPRLQQ........................................................................................................................................................................................................................................................................................ 247
7 -33.400d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  15  1.........................................................................TMEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE---NKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMNGQIIAEGRGEEEIKNVLSDPKVVEIYIGE........................................................................................................................................................................................................................................................................................ 254
8 -33.000d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  22  1..........................................................................................................................................................................................................................................................................................................................................................MIKLSNITKVFHQQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGELTKARRQIGMIFQH--NLLSSRTVFGNVALPRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE......................................................... 221
9 -30.600d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  21  1............................................................................DITFRNIRFRYKPDSILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID---GHDLALADPNWLRRQVGVVLQDNV--LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTVKN-ADRIIVME-----KGKIVEQGKHKELLS................................................................................................................................................................................................................................................................................................. 226
10 -30.100d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  12...........................................................................................................................................................................................................................................................................................................................................................VQFQDVSFAYDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGEHRYLHRQVAAVGQEPQ--VFGRSLQENIAYGLTQKPTMEEIGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHILFLEGGAIRE......................................................... 231
11 -29.900d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  23  1..........................................................................................................................................................................................................................................................................................................................................................MIKLKNVTKTYKMYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNITKIRRDKIGFVFQQFNLIPLLTALENGEERRKRALECLKMAELERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARF-GERIIYLKDGEVERE........................................................ 226
12 -29.000d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}  ali model 3D-neighbors follow..  20  1..........................................................................................................................................................................................................................................................................................................................................................MLSARHVDFAYDDSELRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGSLENWRSQIGFVSQDSA--IMAGTIRENLTYGLEGDYTDEDLQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRLSTIVD-ADKIYFIEKGQITG......................................................... 217
13 -28.400d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}  ali model 3D-neighbors follow..  17  1.......................................................................MVSDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN---GQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLET-----GQIVLEGKASELLD................................................................................................................................................................................................................................................................................................. 228
14 -25.900d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  20  3............................................................................................................................................................................................................................................................................................................................IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQF-----------IMPGTIKENIIFGVSYDEVVKACQLQQDITKFAVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVESCVCKLMAN--KTRILVTSKMEHLRK-ADKILILHQGSSYF----TFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETLRR............. 279
15 -24.100d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]}  ali model 3D-neighbors follow..  21  2.......HTVKIYDTC--IGCTQ-CVRACPTDVLEVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVYLGAETTR..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 74
16 -21.700d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}  ali model 3D-neighbors follow..  24  38........VGVDFDLC---ADG-SCINACPVN-----VFQWYDTPKADPVNEQACIFCMACVNVCPVAAIDVKP............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 102
17 -20.800g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}  ali 3D-neighbors follow..  16  3..................................................................LERVTVKNFRSHSDTVVEFKEG----------------INLIIGQNGSGKSSLLDAIDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD-AADHVIRISLENGSSK.............................................................................................................................................................................................................................................................................................................. 288
18 -20.600d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}  ali model 3D-neighbors follow..  23  22...DKLHFVQIDEAKCI--GCDT-CSQYCPTA-----AIFGEMGEPHSIPHIEACINCGQCLTHCPENAIYEAQ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 84
19 -18.900d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  22  2........SFVNPEKC--DGCKAACEYICP-----NDLMTLDKEKMKAYNREDMCWECYSCVKMCPQGAIDVRGYVDYSPLGGACVPMRGTSDIMWTVKYRNGKVLRF........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 99
20 -17.400d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  22  94LSNIEQVVAVIDEEMC---NCG-KCYMTCN--DSGYQAIQFDPETHLPTVTDT-CTGCTLCLSVCPIDCIRMVSRTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 165
21 -16.000d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  23  2......TPPIPNDEAI--KTCEISTVAACPTG-----ALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPL................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 60
22 -15.500d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]}  ali model 3D-neighbors follow..  32  1........AYVINEAC---SCGA-CEPECPVN-------AISSGDDRYVIDADTCIDCGACAGVCPVDAPV................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 53
23 -15.300d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]}  ali model 3D-neighbors follow..  26  8..DERSKSLTVDRTKC---LCG-RCVNACGKNT-ETYAMKFLNKNGKTIIGDTNCLLCGQCIIACPVAALSEKS............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 83
24 -14.900d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}  ali model 3D-neighbors follow..  33  1........AFVVTDNC---KCKYDCVEVCPVD--------FYEGPNFLVIHPDECIDCALCEPECPAQAI................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 54
25 -14.600d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  32  3..........VICEPCIGVK-DQSCVEVCPVE--------IYDGGDQFYIHPEECIDCGACVPACPVNAI................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 54
26 -12.800d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  23  24...........GLEKC---GCSL-CAAACPAYAIYVEPAENDPENPVS-INMLRCIFCGLCEEACPTGAIVLGDFEMADYEYSDLVYGKEDML.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 112
27 -11.800d1n8yc4 g.3.9.1 (C:489-608) Protooncoprotein Her2 extracellular domain {Rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  24  1..........VCNSLCAHGHCGQECVEECRVLPCHPECQPQNSSETCFGSEADQCAACSSCVARCPSGVKP................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 97
28 -11.700d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}  ali model 3D-neighbors follow..  19  10....AINVPQWVPENC---QCN-QCAFVCPHSAILPVLAKEEELVGAPAINTLDCMGCGNCADICPPKEKALVMQPLDTQRD..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 104
29 -11.400d1h0hb_ d.58.1.5 (B:) Tungsten containing formate dehydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]}  ali model 3D-neighbors follow..  15  66.........LFFPDQCR--HCIAPCKATADMEDES--AIIHDDATGCVLFTPKTLEDYESVISACPYDVPRKVAESNQMAK...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 136
30 -11.300d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL, N-terminal domain {Pelobacter acidigallici [TaxId: 35816]}  ali model 3D-neighbors follow..  11  65.................PTPCMH-CENAKGNGAV------YQREDGIVLIDPEKAKGKKELLDTCPYGVMYWNEEENVAQKTMCAHLLDDESWAPKMPRCAHNCGSFVYEFLKTTPEAMAKKVE........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 169
31 -11.200d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  22  93.........LIRKDGCM--HCEDPCLKACPSA-----GAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYK--AIHFGTKKEMLELKLKARGYEHAGVYNPEGVGGTHVMYVLHHADQPE..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 234
32 -10.400d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  13  26.......................................................................................................NFTSIIGPNGSGKSNMMDAISFVL-------------GVRSNHLRSNILKDLIYRGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISR--------------NGDTSYKIDGKTVSYKDYSIFLENE------------------NILIKAKNFLVFQGDVEQIAA-VELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLK----KKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRF-----KDMEYLSGGEKTVAALALLFAQPSPFFVLDEVDAALDITNVQRIAAYIRRH-RNPDLQFIVISLKNTMFEK-SDALV.................................................................. 406
33 -10.300d1n8yc3 g.3.9.1 (C:166-322) Protooncoprotein Her2 extracellular domain {Rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  14  2...........RSRACPPEDCGTICTSGCARCKGRLPTDCCHEQCAAG--KHSDCLACGICELHCPALVTYNTDTFESMHNPEGRYTFGASCVTYNYLSTEVGSCTLVCPPN....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 132
34 -10.100d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  10  3.........................................................................................................IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDP------------------ETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILER--------------AYREAKKDRRKVIIIDE-IGKMELFSKKFRDLVRQIMHDPNVNVVATIPI.................................................................................................................................................................................................................................................................................................................................... 139
35 -10.100d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  181.................PRLCEHACVATCP-----SGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYF-NWKSGKSEKCIFCYPR----------IEAGQ---VCSETCVGRIRYLGVLL-FLDPNDPKVIEQAIKDGIPLSVIEAAQQSPVYKMAMEPLHPEYRTLYVPPLSPIQSAADAGELGSNGILPDVESL--RIPVQYLAN-----LTAGDTKPVLRALKRMLAMRHYKRAEEEVGLTEAQAQEMYRYLAIANYEDRFVVPSSHR.................................................................................................................................................................................................................................................................................................................................... 463
36 -9.950d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  10  1....................................................................................................................................................................................................................................................................................................................................................................................TLIILEGPDCCFKSTVAAKLSKEL----KYPIIKGSSFELAKSGNEKLFEHFNKLADEDIIDRFVYSNLVYAKKFK-DYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKLRVRGDEYIEGKDIDSILELYREVMSNAGLHTYSWDTGQWSSDEIAKDIIFL................................................................ 162
37 -9.830d1vfia1 g.84.1.1 (A:4-95) Vanadium-binding protein 2, vanabin 2 {Vanadium-rich ascidian (Ascidia sydneiensis samea) [TaxId: 79730]}  ali model 3D-neighbors follow..  24  11............TTPCEPLACKEKCAESCETSADKKTCRRNCKKADCEPQDKV-CDACRMCASECP..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 74
38 -9.810d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  26................................................................................................................................................................................................................................................................................................................................................................................MVAGTVGALVSPGGAGKSMLALQLA--AQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVDGLLIQPLIGSLPNIMAPEWFDGLK---RAAEGRRLMVLD-TLRRFASGPMAQVIGRMEAIAADTGCSIVFLHHKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFFVRFGVSKANYGAPFADR.......... 249
39 -9.780d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]}  ali model 3D-neighbors follow..  16  4........TIVDKETC-------ACGAAAPDIEDGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADEP........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 72
40 -9.740d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  1...................................................................................................................................................................................................................................................................................................................................................................................ARHVFLTGPPGVGKTTLIHKASEVLKSSGGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSS-------GPGQRVCVIDE-IGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIVTCVQS...................................... 186
41 -9.670d1igra3 g.3.9.1 (A:150-299) Type 1 insulin-like growth factor receptor Cys-rich domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  53............HPECNDTACAGVCVPACPPNTY--------RFEGWRCVDRDFCANIGECMQECP..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 129
42 -9.620d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}  ali model 3D-neighbors follow..  12  4................................................................................................................................................................................................................................................................................................................................................................................LKKGMTTVLDFHPGAGKTRLPQILAECARRRLRTLVLA------------------TRVVLSEMKEAFH-GLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDE--AHFLDPASIAARGWAAHRARANESATILMT................................................................................ 136
43 -9.060d3c7ba1 d.58.1.5 (A:239-304) DsrA insert domain {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  26  6..........VDQEAVKE-DIENEVVKLCPTG--------IKWDGKELTIDNRECVRCMHCINKMP..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 58

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Shiryaev SA, Ratnikov BI, Chekanov AV, Sikora S, Rozanov DV, Godzik A,Wang J, Smith JW, Huang Z, Lindberg I, Samuel MA, Diamond MS, Strongin AY. Cleavage targets and the D-arginine-based inhibitors of the West Nile virus NS3 processing proteinase. Biochem J. 2006 Jan 15;393(Pt 2):503-11.