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O15254.151-450
Query: sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 151-450), from H.sapiens

Results of FFAS03 search in SCOP175
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EIFGCFALTELSHGSNTKAIRTTAHYDPATEEFIIHSPDFEAAKFWVGNMGKTATHAVVFAKLCVPGDQCHGLHPFIVQIRDPKTLLPMPGVMVGDIGKKLGQNGLDNGFAMFHKVRVPRQSLLNRMGDVTPEGTYVSPFKDVRQRFGASLGSLSSGRVSIVSLAILNLKLAVAIALRFSATRRQFGPTEEEEIPVLEYPMQQWRLLPYLAAVYALDHFSKSLFLDLVELQRGLASGDRSARQAELGREIHALASASKPLASWTTQQGIQECREACGGHGYLAMNRLGVLRDDNDPNCTYLast
1 -74.800d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  50  129QIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNG-KDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSD................................................................................................................................................................ 270
2 -66.300d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  38  3...................................................................................................................................................QLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTERLAASD-----FATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLWCSGLPELFAVYVPACTY 151
3 -31.700d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  29  117PALAAFALSEPGNGSDAAALKTRAIRQG--DHYVLN-----GTKMWISN-GGEAEWVVVFATV-NPELRHKGVVALVVE-------RGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGE.............................................................................................................................................................................. 226
4 -31.000d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  23  122EKFASYCLTEPGSGSDAASLLTSAKKQG--DHYILN-----GSKAFISG-AGESDIYVVMCR--TGGPGPKGISCIVVE-------KGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGS.............................................................................................................................................................................. 230
5 -30.900d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  27  126ELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLN-----GTKTWITN-SPMADLFVVWARC-----EDGCIRGFLLE-------KGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASS........................................................................................................................................................................... 236
6 -30.600d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  33  120DKIGCFALSEPGNGSDAGAASTTAREEG--DSWVLN-----GTKAWITN-SWEASATVVFAST-DRSRQNKGISAFLVP-------MPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPG............................................................................................................................................................................ 231
7 -30.000d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  27  119EALGAWGLTEPGSGSDAAALKTKAEKVE--GGWRLN-----GTKQFITQ-GSVAGVYVVMART-SPERKHQGISAFAFF-------RPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGE.............................................................................................................................................................................. 232
8 -29.800d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  22  1...............................................................................................................................................GKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGR------PIAEFEGVSFKLAEAATELEAARLLYLK-----------------AAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIG 134
9 -29.500d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  1...............................................................................................................................................GQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGE------PLASNQYLQFTLADMATRLVAARLMVRNA----------------AVALQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQIL 135
10 -29.500d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}  ali model 3D-neighbors follow..  25  104..LAAVGFSERQAGSDLSAMRTRVRLDG--DTAVVD-----GHKVWTTA-AAYADHLVVFGLQ-----EDGSGAVVVVP-------ADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSG............................................................................................................................................................................ 209
11 -29.400d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  27  123EYIGALAMSEPNAGSDVVSMKLKAEKKG--NHYILN-----GNKFWITN-GPDADVLIVYAKTDLAAVPSRGITAFIVE-------KGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGH.............................................................................................................................................................................. 234
12 -29.000d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  1................................................................................................................................................KGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQ------KIGHFQLMQGKMADMYTRLMACRQYVYN-----------------VAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRDAKLYEIG 133
13 -28.700d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  1..................................................................................................................................................LGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGV------PLARNQLIQKKLADMLTEITLGLHACLQL-----------------GRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTY 131
14 -27.500d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}  ali model 3D-neighbors follow..  16  5....................................................................................................................................................LVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGR------PLGDHQLVAGHIADLWTAEQIAARVCEYA----------------SDHWDEGSPEMVPATILAKHVAAERAAAGAATAAQVLASAGAREGHVVERAYRDAKLMEII 134
15 -27.400d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}  ali model 3D-neighbors follow..  19  125EPLASLMHSEPNGTANWPGLQTTARKVG--NEWVIS-----GEKLWPSNSGKGADLACVVCRVSDDPSKATQIAVLLVT-RETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLC............................................................................................................................................................................... 258
16 -26.000d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}  ali model 3D-neighbors follow..  12  8....................................................................................................................................................LVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSK-----HIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLED-------------EALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLF 141
17 -18.300d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]}  ali model 3D-neighbors follow..  142DLIVDGAMTDPKGDRGLAPSAQLRIVEKREDGIVVR-----GAKAHQTGSI-NSHEHIIMPTIAMTEADKDYAVSFACPS-------DADGLFMIYGRQSCDTRKMEEGAVVFDNVFIPNDRIF................................................................................................................................................................................ 273

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]