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Q99490.1-300
Query: sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 1-300), from H.sapiens

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSRGAGALQRRTTTYLISLTLVKLESVPPPPPSPSAAAVGAPGARGSEPRDPGSPRGAEEPGKKRHERLFHRQDALWISTSSAGAGGAEPPALSPAPASPARPVSPAPGRRLSLWAAPPGPPLSGGLSPDSKPGGAPSSSRRPLLSSPSWGGPEPEGRTGGGVPGSSSPHPGTGSRRLKVAPPPPAPKPCKTVTTSGAKAGGGKGAGSRLSWPESEGKPRVKGSKSSAGTGASVSAAATAAAAGGGGSTASTSGGVGAGAGARGKLSPRKGKSKTLDNSDLHPGPPAGSPPPLTLPPTPSLast
1 -13.600PF05782.6; ECM1_HUMAN/1-540; Extracellular matrix protein 1 (ECM1)  ali follow..  11  1MGT------TARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHPDSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPSLQHPNEQKEGTPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQICLPNRQHVVYGPWNLPQSSYS............................................................................................. 201
2 -13.300PF03344.10; A7KII2_SALSA/6-727; Daxx Family  ali follow..  415.RQKKESLAQEATTANDNPLTKGEDEGEEQAEEEDDEDDESSDPDIEEEIQASKAQAGPEEEEDNEVEAANESETEVDGGSDGDQDGGEKEENAEDTDSVMRGISLVSRGDTPRISSLVDQSPTDSPSQSEAMEADKENESSDTNFIKEDVVSSNHISAVSVSTSVETKDSSASPMAANQVSLPPSPVLISTNEDSCTVITETRSANCSPRPPSPKDTSRGRKRRRKEEVESRKFHNGDLRHHNGSESDLPLDMGVVTSSLLRADSTRADTPTQEMVTSSQSTPPPKKNKVNVATQCDPD 713
3 -12.900PF05934.6; CLCC1_HUMAN/3-551; Mid-1-related chloride channel (MCLC)  ali follow..  10  362.................................................GGPESEPPQALRPRDRRRQEEIDYRPDGGAGDADFHYRGQMGPTEQGPYAKTYEGRREILRERDVDLRFQTGNKSPEVLRAFDVPDAEAREHPTVVPSHKSPVLDTKPKETGGILGEGTPKESSTESSQSAKPVSGQDTSGNTEGSPAAEKAQLKSEAAGSPDQGSTYSPARGVAGPRGQDPVSSPCG............................................................... 549
4 -12.600PF11725.3; A8E3E7_PSEVI/1-1719; Pathogenicity factor  ali follow..  1MLPINNAPVTGQVHGATSGQNPRGLEQRPEPPTQRASVSVVQLGKQPVQVPVTQQPDIPPRTFGPTPGALTPTAAPEQTAPQLDADDIAHISSARRPPVTRSSSTGSERPTTALQRELSFKDWLPSQESSPARSDHQPGPSRSGGNTPAQSHASGSTQDASPRPQLTRSAAGNAGTFRMENGNLERNTPSINIISLDAKGRPDFDHFIPSALGNLLKDRLGQPGKSYLATNSASDRDQVLLEPKGHLIQIAQTDAALALLRSSKPLSVPPGSKPDSLKLQREDNSASIAGHDSGAQSLPD 301
5 -10.600PF05460.8; Q75D89_ASHGO/10-395; Origin recognition complex subunit 6 (ORC6)  ali follow..  12  74.........................EKIPLEPRKTVKLVGLFKQTLWTSSPVRNLNLSPSPKKDGGRLSARDPVELRAELFGTPVKRAGAVTLPGAGELSPTKQLSPSKPMSPVKPSPRRRLAFEDEDEDYEPDASPQPS-PRRSIFPGGFEPDPDESEFDSPTKSPFKSPTRSPTKSAQSSPRKKRGEYNQWNMLYKKYYRITPEE............................................................................................. 254
6 -10.100PF04642.7; O81452_ARATH/31-334; Protein of unknown function, DUF601 topsan  ali follow..  1MAGTLEDSKLRALDKAKQPQNEDDSGTRQKSSALSGKGPKISTSEARTSNKNTPDKEPTKRDADKKRKHSETDARSPSRSSRAGNEAKETGQNQQKGKNKKGDSQDLVVLSSRVSESRYSQRRTTSPLPAP......................................................................................................................................................................... 131
7 -9.710PF08580.5; Q6FY01_CANGA/41-592; Yeast cortical protein KAR9  ali follow..  388.SHGASNRRSVSEGTPSASRQFGSVLLKRMRIKPVSNTNKDQLLDDPNPFFDKKSRNSGKLVLNSIPALPKDPVTEPTKISKPQTISSSTPVKTAKSLEELEGERIMYYKTHGTTKLPSLMKKAERTQFSKYKETGTIATPQRTPKSMNAWGPSSKRGNVLRPP........................................................................................................................................ 552
8 -9.610PF06193.6; VA05_VAR67/1-271; Orthopoxvirus A5L protein-like  ali follow..  12  64......ASRQPIQPLQPTIHITPLQVPTPAPTPKPRQQQTNTSSDMSNLFDWLSADDNTQPSSLLPALTPINAVQDIISKFNKDQKTTTTPSTQPSQTLPTTTCTQQSDGSISCTTPTVTPPQPPIVATVCTPTPTGGTVCTTAQQNPNPGATSQ................................................................................................................................................. 212
9 -9.590PF05609.7; TOIP1_RAT/122-583; Lamina-associated polypeptide 1C (LAP1C)  ali follow..  3...........................................................................................TRRSTRLEQHSQQAQQQLSPATSGRGLRDAQSLSEDRGEDEPSSQPVTSQTVSKKTVRTPETSVMSEDPISNLCRPPLRSPRPDASIVQHINPFEEGETEDDLESSYSDVTIRIRSRDSVESRDEAAVAAGHHPDSLWGLPHSRGDFTAHENQPSLLPTGCQKNPQEWVEQAVRMRTRMAYNNIQKSDFGNQSPSTSRQQAAVQPPDES 211
10 -8.960PF04388.7; Q7SXZ2_DANRE/3-691; Hamartin protein  ali follow..  268.ASSEEGYSSLADHIQRRAVHHSQSCSELSFHEISSVTPIGAICQSLSKSQPYLTVTQDSGSSAQTPNNQSDEVKSSGMKEELWSPSSICGMSTPPSSRGMSPTTVSDISLSASHLSGRIPSTPGDGKWTLSPSTPSGSSPLPSLSEEIGQAAQNTSSTQAKTCEEVKKVTSRSINNSSENGGDAKTPVSLAQLSDIVKRTEGEREDDTINEEILSLTHGKLDFGSRPGLESSFSGSLDTLLSSHPNHEQNLVSTPDRVECSAKAGEHQLPRSLWPFTPIENGKHSKCSLSDLTKESMPY 566

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.