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15644655
Query: gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in SCOP175
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MASLFHLRFLKPLSCLQAGLLYSLIFGVLYHFPLFVYVYKESNQVSFIAMMVVVLFCVNGALFLALGLISASLMRWSAIVFSLLNSVAFYFISAYKVFLNKSMMGNVLNTNTHEVLGFLSVKLFVFIVVFGVLPGYVIYKIPLKNSSKKAPFLAILALVFIFIASALANTKNWLWFDKHAKFIGGLILPFAYSVNAFRVSALKFFAPTIKPLPLFSPNHSHSFVVLVIGESARKHNYALYGYQKPTTPRLSKRLADNELTLFNATSCATYTTASLECILDSSFKNNAYENLPTYLTKAGIKVFWYSANDGEKNVKVTSYLKNYELIQKCPNCEAIAPYDESLLYNLPDLLKEHSNENVLLILHLAGSHGPNYDNKVPLNFRVFKPYCSSADLSSCSKESLINAYDNTIFYNDYLLDKIISMLENAKQPALMIYLSDHGESLGEEAFYLHGIPKSIAPKEQYEIPFIVYANEPFKEKHSIIQTQTPINQNVIFHSVLGVFLDFKNPSVVYRPSLDLLKHKKELast
1 -11.800d1auka_ c.76.1.2 (A:) Arylsulfatase A {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  1...........................................................................................................................................................................................................................RPPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLR-FTDFYVPVSLGTPSRAALLSRGGLPLEEVTVAEVLAARGYLTGWFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVPIPLLANLSVEAQPPWLPGLEARYMAFAHDLMADAQRQDRPFYPQFSGQSFAERSGR---GPFGDSLMELDAAVGTLMTAIGDLGLETLVIFTADNGPETGCSGLLRCGKGTTY--EGGVREPALAFWPGHIAP----GVTHELASSLDLLPTLAAL-----AGAPLPNVTLD....... 336
2 -10.600d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  1........................................................................................................................................................................................................................AASRPNIILVMADDLGIG-DPGCYGNKTIRTPNIDRLASGGVKLTQHLAASPLATPSRAAFMTGRYPVRS-EITFAKLLKDQGYST-WH-SCHSKTDFCHHPLHHGFNYFYGISLTNLRDCKPQRLTVEAAQFIQRNTETPFLLVLSYLHVHTALFSS------------------KDFAGKSQHGVYGDAVEEMDWSVGQILNLLDELRLDTLIYFTSDQGAHVGSNGIYKGGKANNW--EGGIRVPGILRWPRVIQAG---QKIDEPTSNMDIFPTVAKLAGAPLPEDRIID........... 400
3 -9.650d1fsua_ c.76.1.2 (A:) Arylsulfatase B (4-sulfatase) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  1..........................................................................................................................................................................................................................SRPPHLVFLLADDLGWNDVGFHGSRIRT-PHLDALAAGGVLNYYTQPLATPSRSQLLTGRYQPSCVPLDEKLLPQLLKEAGYTT-WHLGMLGSEDYYSHERCTLIDALNVTRCALDFRDGEEVATGYKNMYSTNIFTKRAIALITNHPPEKPLFYLALQSVHEPLQVPEEYLKPYDFIQDKNRHHYAGMVSLMDEAVGNVTAALKSSGLNTVFIFSTDNGGQTGGNNWPLRGRKWSL--EGGVRGVGFVASPLLKQKG---VKNRELIHISDWLPTLVKLARGHTNGTKPLD........... 331
4 -9.350d1hdha_ c.76.1.2 (A:) Arylsulfatase B (4-sulfatase) {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  13  1..........................................................................................................................................................................................................................KRPNFLVIVADDLGFSD-IGAFGGEIAT-PNLDALAIAGLTDFHTASTGSPTRSMLLTGTDHHIGKPGYE-ALPELLREAGYQTLMAGKDESTPRILKGTPALYVEDERYLDTLPEGFYSSDAFGDKLLQYLKERDQSRPFFAYLPFSAHWPEIVEKYRGRYDAGPEALRQERLARLKELGLVEVYAAMVERMDWNIGRVVDYLRRQGENTFVLFMSDNGENIGRANSYVWTAPSAFTTQGGIRVPALVRYPRLSRQGAISHAFATVM---DVTPTLLDLAGVRHPGKRWRGREI........ 430
5 -7.880d2i09a1 c.76.1.5 (A:2-107,A:227-403) Phosphopentomutase DeoB {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  12  4............................................................................................................................................................................................................................NRIHLVVIGAAPDANNFSNAGVPDGASDTLGHISKTVGLNVPNMAKIGLGNIPRD-TPLKTVPAENHPTGYVTKLEEVSLGKDTMTGHWEIMGLNITEPXSPFAPTVLNKLADAG--VSTYAVGKINDIFNGSGITNDM---NKSNSHGVDTLIKTMGLSAFTKGFSFTNLVD--GHRRNAHGYRDCLHEFDERLPEIIAAMKVDDL---LLITADHGND-----------TYAGTDHTREYVPLLAYSPS---------TGNGVLPVGHYADISATIADNFGVDTAMIGESF........ 279
6 -6.990d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  3.......................................................................................................................................................................................................................................ETQDIIKRSATNSITPPSQVRDYKAEVAKLIDVSTCIGCKACQVAC-------SEWNDIRDEVGHCVGVYDNPADLSAKSWTVMRFSETEQNGKLERKDGCM--HCEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYIAGCPFNIPRLEPAC----VKTCPTGAIHFGTKKEML---ELAEQRVAKLKARGYEHAGVYNPE--GVGGTHVMYV--LHHADQPELYHGLP......................................................... 240
7 -6.180d1k0da1 a.45.1.1 (A:201-351) Yeast prion protein ure2p, nitrogen regulation fragment {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  14  16........................................................................................................................................................................................................................................................................................................................................................................LFFQTSGHAPMIGQAL--HFRYFHSQKIASAVERYTDERVYGVVEMALAERREALVMELDTENAAAYSAGTTPMSQ--SRFFDYPVWLVGDKLTIA-----DLAFVPWNNVVDRIGINIKIE---------FPEVYKWTKHMMRRPAVIK........... 149
8 -6.170d1s58a_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid protein {Human parvovirus B19 [TaxId: 10798]}  ali model 3D-neighbors follow..  10  1...........................................................................................................................................................................................................................................NPVKSMWSEGA-------------TFSANSVTCTFSRQ---FLIPYDPEHHYKVKVCTITPIMGYSTPW-----------------------------------------------------RYLDFNALNLFSPLEFQHLIENYGSIAPDALTVTISEIAVKDVTDKTGGGVQVTD-------------SATGRLCMLVDHE----------YKYPYVLGQGQDTELPIWVYFPPQYATQGISGDSKKLASEESAFYVLFQLLGTGGTATMSYK........... 215
9 -5.960d1xp3a1 c.1.15.1 (A:2-298) Endonuclease IV {Bacillus anthracis [TaxId: 1392]}  ali model 3D-neighbors follow..  12  15..................................................................................................................................................................................................................................LLAASEEAVSYGATTFMIYTAPQNTRRKPIEELNIEAGRKHMEQNGIE-----EIIIHAPYIINVGNTTKPETFQLGVDFLRMEIERTSALGVAKQIVLHPGAHVGAGADAGIQQIIKGLNEVLT--PDQTVNIALETMAGKGTECGRSFEEIAKIIDGVKYNEKLSVCFDTDIVNNFDGVLNEFDKIVGDRLQVLHINDSKNVRGAGKDRHENIGFGHIGYKALHHIVHHPQLTHVPKILYVGEDKKDKKPPYKLEIEMLKNGTFDEGL......................... 290
10 -5.530d1lp3a_ b.121.5.2 (A:) Dependovirus capsid protein {Adeno-associated virus, aav-2 [TaxId: 272636]}  ali model 3D-neighbors follow..  11  1.............................................................................................................................................................................................................................................GADGVGNSSGNWHCD------STWMGDRVITTSTRT---WALPTYNNHLYQSGASNDNHYFGYSTPW-----------------------------------------------------GYFDFNRFHCHSPRDWQRLINNNWGFRPKRLNFKLFNIQVKEVTQN-DGTTTIAN-------------NLTSTVQVFTDSE----------YQLPYVLGSAHQGPFPADVFMVPQYG--LTLNNGSQAVGRSSFYYFPSQMLRTGNNFTFSYT........... 198

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. VISSA: a program to visualize structural features from structure sequence alignment. Bioinformatics. 2006 Apr 1;22(7):887-8. Epub 2006 Jan 24.