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Query: gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in SCOP175
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAKEIKFSDSARNLLFEGVRQLHDAVKVTMGPRGRNVLIQKSYGAPSITKDGVSVAKEIELSCPVANMGAQLVKEVASKTADAAGDGTTTATVLAYSIFKEGLRNITAGANPIEVKRGMDKAAEAIINELKKASKKVGGKEEITQVATISANSDHNIGKLIADAMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRAAQKVHLNLHDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEVEKHEGHFGFNASNGKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKAAPAMPDMGGMGGMGGMGGMMLast
1 -86.400d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  63  2.......................................................................................................................................................................................LVPRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGV........................................................................................................................................................................... 193
2 -68.300d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  32  1.................................................................................................................................................................................................................................................................................AAKDVKFGDAGVKMLRGVNVLAD--AVKVTLGPKGRNVVLDKSFGAPTI--TKDGVSVAREIELEDKFENMGAQMVKEVASKANDADGTTTATVLAQITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVXGVVAGGGVALIRVASKLARGQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPK....................... 253
3 -33.400d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  45  3......................................................................................................................................................................................................................................................................................................................SDSKAIAQVGTISANSDETV---GKLIAEAMDKVGKEGVITVEDTGLQDELDVVXERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEE.......................................................................................................................................... 98
4 -19.700d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}  ali model 3D-neighbors follow..  19  13.......GRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDL----QHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRIELAIRLDEYAKQVGGKEALAIENFADALKIIGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPA-------DMLEKGIIEPLRV------------KQAIKSASEAAIMILRIDDVIAAKA................................................................................................................................................................................................................................................................................................. 259
5 -5.630d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]}  ali model 3D-neighbors follow..  19  1........................................................................................................................................................................................DSCVLRGVMINKDVTHP-------RMRRYIKNPRIVLLDSSLEYKKGIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRV-----------RKTDNNRIARACGARIVSDDVGTGAGLLEIKKIGDEYFTFITKACTILLRG.................................................................................................................................................................................................................... 168
6 -5.440d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  164...........................................................................VLTGLPDAYGRGRIIGDY--RRVALYGIDYLMKDKTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAKYGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFG-----RTST-FLDVYIERDLKAGKITEQEAQEMVD--KLRMVRFLRTPEYDELFSGDPESIGGMGLDGTLVTKNSFRFLNTLYTMGPSPEPNMTIL-LNFKKFAAKVSIDQYENDDLMRPDFNNDYAIACCVSPMIVGKQMQFYAINGGVDEKLKMQVGPKSEPIKGDVLNYD--EVMERMDHFMDWLAKQYITALNIIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYPQFGNN-----------------DPRVDDLAVDLVERFMKKIQKLHTYRDAIPTQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGR. 639
7 -5.290d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}  ali model 3D-neighbors follow..  16  1.............................................................................................................................................................................................RGVVIDKEVVHP-------RMPKRVENAKIALINEALEVKKTLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRV-----------KKSDMEKLAKATGAKIVT-----NVKDLTPEDLGYAEVVKLAGENMIFVEGCKN................................................................................................................................................................................................................. 152
8 -5.120d1rp3b_ a.137.11.1 (B:) Anti-sigma factor FlgM {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  14  32.............................................................................................................................................................................................................................................................................................................................IEDKVTLSKIAQELSKNDVEEKDLEKKVKELKEKIEKGEYEVSDEKVVKGLIEF............................................................................................................................................................................... 85
9 -4.770d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}  ali model 3D-neighbors follow..  11  2.................................................................................................................................................................................................................................................TTRPLAIL--DLGAGSTDASIIN-PKGDIIATHLAGAG----------TMIIARELGLEDRYLAEEIKKYPLAKVESLFHLRHEDGSVQFFSTPLPPAVFARVCVVKADELVPLPGDLALEKVRAIRRSAKERVFVTNA-----------RALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLIL......................................................................................... 197
10 -4.690d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, C-terminal domain {Thauera aromatica [TaxId: 59405]}  ali model 3D-neighbors follow..  14  132AKGTVRLLQTREETFIAHRGRPWTEVKMKIG----------------LKKDGKIAALALEA---TQAGGAWRVYTNTPPCGAMRGHGTVDTRAAFEALLTEMGEEL--GIDSLKIRQGVPECLEKVKAASGWEERKGKLPKGLSHFVSGTSTPKHWTGEPHATVNLKLDFDGGITLLTGAA-----------DIGQGSNTMASQVAAEVLGVRLSRIRVISADSALTPKDNGSYSSRVTFMVGNASISAAEELKGVLVKAA-------------------AKKLDAREEDIEVIDEMFMVSGSQDPGLSFQEVVKAAMVDSGTITVKGTYTCPTEFQGD------IRGSAIGATMGFCYAAQVVEASVDEITGKVTAHKVWVAVDVGKALNPLAVE-------GQTQGGVWMGMGQALSEET-VYDNGRMVHGNILDYRVPTIVESP----------DIEVIIVESMDPNGPFGAKEAS-------EGMLAGFLPAIHEAVYEAVGVRDFPLSPDRITELLDAKEAAA.................. 636
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Doukhanina EV, Chen S, van der Zalm E, Godzik A, Reed J, Dickman MB. Identification and functional characterization of the BAG protein family inArabidopsis thaliana. Biol Chem. 2006 Jul 7;281(27):18793-801. Epub 2006 Apr 24.