current user: public



Announcement: our server is upgraded to a faster system. If you experience any issues during this period please let us know.

15644644
Query: gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst MKFQPLGERVLVERLEEENKTSSGIIIPDNAKEKPLMGVVKAVSHKISEGCKCVKEGDVIAFGKYKGAEIVLDGTEYMVLELEDILGIVGSGSCCHTGNHDHKHAKEHEACCHDHKKHLast
1 -51.300PF00166.16; CH10_CORGL/5-97; Chaperonin 10 Kd subunit  ali follow..  43  1.NIKPLEDKILVQINEAETTTASGLVIPDSAKEKPQEATVIAVGPGGNRIPLDIKEDDVVIFSRYGGTEIKFGGVEYLLLSARDILAIV............................. 93
2 -6.820PF00877.14; P74160_SYNY3/112-245; NlpC/P60 family  ali follow..  19  26....................ASQGIWLPRDSYQQAAFCQQVVDVRPQRRIAKEFLPGDLIFFGNQRVDHVGM.............................................. 88
3 -5.710PF05382.8; O21982_9CAUD/10-163; Bacteriophage peptidoglycan hydrolase  ali follow..  42....................KEAGIPIQGLPSTVTLGQQLAKNGRISRNEDWNAETGDIVLMSWGADMASSGGAGGHVGVMMDS.................................. 107
4 -5.400PF01079.15; Q66PH6_9TELE/184-413; Hint module  ali follow..  16.....................................SSHVRLKDSRQKALKDLKPGDSVLSADESGNLVYSDFIMFTDRDPSTRRVFYVIETKAPVQK................... 77
5 -5.290PF03795.9; Q984U5_RHILO/1-115; YCII-related domain  ali follow..  21  32................DEVLKASGHFVTAEALVLPEEAMTLQVRDGKM----------STVDGPFIETKEVLGG--IIVIEARDLNEAVRVASGHPLA.................... 101
6 -5.210PF02563.11; A1WA72_ACISJ/69-152; Polysaccharide biosynthesis/export protein  ali follow..  10  17......NDLLEIEVFGVSELKRTVRVNSTGHVSLPLVGMVQVAGLTPSDAEALIALQYGGKYLQDPQISIFI.............................................. 82
7 -5.120PF01810.13; RHTC_ECOLI/13-206; LysE type translocator  ali follow..  11  3ALMSPGPDFFFVSQTAVSRSRKEAMMG------------VLGITCGVMVWAGIALLGLHLIIEKMA-TLIMVGGGLYLCWMGYQMLRGALKKEAVSAPAPQVELAKSGRS........ 102
8 -5.000PF05636.6; Y2049_LISMO/1-387; HIGH Nucleotidyl Transferase  ali follow..  18  2........KATGIVVEYNPFHNGHKLHLNKARELTQADVVIAVMSGS------VQRGEPAIIPKWERAKMALSAGVDMVVELPVSFATQHATIFAEEAV................... 87
9 -4.990PF00965.12; Q4SGL4_TETNG/26-203; Tissue inhibitor of metalloproteinase  ali follow..  21.........IRAKLVERQEVDVGNDIYGNPVKQIKFGVKQIKMFKGPTQDIEAIYTPPS---SAMCGVSLQANGKEYLITGKLNLCDFIELWESTSATQKKSLTQRYEMGCC...... 129
10 -4.990PF00595.19; LIMK2_CHICK/152-236; PDZ domain (Also known as DHR or GLGF)  ali follow..  12  1..........LISMPAATDGKRGSVSVEGGCSSYATGVQVKEVNRMHISPDVRIHPADRIL---------EINGAPIRTLQVEEVEDLIRKTS......................... 77

FFAS is supported by the NIH grant R01-GM087218-01
6 0 9 6 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Locations of visitors to this page
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jambon M, Godzik A. New avenues in protein function prediction. Protein Sci. 2006 Jun;15(6):1527-9.