current user: public




15644639
Query: gi|15644639|ref|NP_206807.1| orotidine 5`-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .
# Score Template Links and tools%idFirst MQLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLKLYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSALTSFSEEEFLMVYNAPLKTQAIKLSAMGKESGIDGVVCSVFESLAIKEALGKDFLTLTPGIRLDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREVVLELLKDCLast
1 -101.000PF00215.19; PYRF_STRP1/5-224; Orotidine 5`-phosphate decarboxylase / HUMPS family  ali follow..  34  1.RPIIALDFSSFEETKAFLDLFPAEELYVKIGMELYYAQGPDIVRYIKS--LGHNVFLDLKLHDIPNTVRAAMAVLKELDIDMATVHAAGGVEMLKAAREGLG---QGPTLIAVTQLTSTSEDQMRGNIQTSLLESVLHYSKGAAKAQLDGAVCSAQEVEAIKAVTPTGFTCLTPGIRPKGSNIGDQKRVMTPNQARRIGSDYIVVGRPITQAKDPVAAYQAI.... 220
2 -9.690PF00834.14; RPE_SYNY3/6-208; Ribulose-phosphate 3 epimerase family  ali follow..  15  6...ILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVTIGPLIVDAIRPLTK-----KTLDVHLMIVEPEKYVEDFAKAGADIISVHVHNASPHLHRTLCQIRELGKKA---GAVLNPSTPLDFLEYVLPV---DLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDER-IEVDGGLKPN-----------NTWQVLEAGANAIVAGSAVFNAP............. 203
3 -8.730PF01791.4; Q8PYY5_METMA/39-277; DeoC/LacD family aldolase  ali follow..  10  2..MLFAGDFFGPEVPEDDADPEHLFRIAAQSKIGVFATQ-LGLIARYGMDYKDIPYLVKVNSKTNDIDQVAEFRENSGLNILGVGYTIYLGSEFEAEMLVQAAQVVYDAHQHGMLSVLWIYPRG-AAVKDEKDPHLIAGATGVGACLGSDFV--SAEIFKEAVKAAGRTKVVCAGGSSDEAEAFLKKLH----DQIHISGAQGNATGRNIHQK.............. 239
4 -8.080PF04481.7; YCF23_CYACA/1-245; Protein of unknown function (DUF561 topsan)  ali follow..  10  15IKVISGLTNLNYEHVLTIARAQRACVSYIDI------AADPQLVKVVKANVN------------VSGLEIQPIYNAVLAGADLIEVTVLSVCKIITLVEEIKKLCPRVPLTVTIPYILNQKDQ--------------INLCKQLESLRVDYIQTSLQTLACTYELVKH--IICSSGLSDV-----------TVPLAFSLGASGIGIGKFVTSYYEEEKIVSILSK.. 232
5 -7.820PF03599.11; ACDD_ARCFU/128-451; CO dehydrogenase/acetyl-CoA synthase delta subunit  ali follow..  13  10....................DGGTREYTVTLGFDAPQPHLPAIAIDVFDRRPMLAKAVRMHYEDV-NPAEWARKCVKKFGADLVTLHLISTASEAVKVLEDVLQAVKCPIIVGGSGNKEKDPEVLEKAAEATLDMDWERIANAAKKYGHVVLSWTQMDINNQKTLMPRDSIVMDPTTAALGYGLDYAFTNMERIRISGLKGD--DLNFPIS................ 237
6 -7.390PF04476.8; Y141_METTH/1-234; Protein of unknown function (DUF556 topsan)  ali follow..  12  1MLLLISPI--NTEEALEAIEGGADIVDVKNPAEGSLGANFPWVIRRVREMTPE-DMLVSATLGDVPGTVSLAAMGALVSGADYIKVGLYGTRDVMKNVVRAVKDQSDAIVVAAGLAMLDTAVKDGKTLFDFMDMEKLESFVSAARDHGLKSALAGSVGREHLKHEIGCDVV----GIRGAACVGGDRNTGRIHRDAVRELKELL....................... 233
7 -7.200PF01884.12; GGGPS_ARCFU/1-230; PcrB family  ali follow..  11  9...ITKLD-PDRTNTDEIIKAVA------DSGTDAVMISGTQNVTY----EKARTLIEKVSQYGLPIVVEPSDPSNVVYDVDITGKHAQWVRMHYENLQKFTEIIESEFIQIAVARVTKALCNIDKELAASYALVGEKLFNLPIIYIEYSGTYGNPELVAEVKKVLDKARLFYGGGIDSREK-----------AREMLRYADTIIVGNVIYE............... 220
8 -7.060PF04131.9; NANE_PASMU/35-226; Putative N-acetylmannosamine-6-phosphate epimerase  ali follow..  12...............................GAAGLRIEGIENLKATRNV-------------NVPSPFLQDIEELAAAGADIIAFDGT--DRVRPTTREAIIKRIKELGCLAMADCSNFEE------------------GMYCHNLGVEIIGSTMSGYTGGEIPAEPDYQLV-KDLNAAGCRVMAEGRYNTPELAIEIGAYSVTVGSALTRLEHIVSWFADAVKS. 192
9 -6.410PF09421.5; FRQ_SORFI/12-993; Frequency clock protein  ali follow..  139.......HSSSADDFRSVIDDLTVENKRLKEELKRYKQFGSDMMRK--------KLF-EIKVHGLPRRKKRELEATLR----------AASLGDSSESTSQRRKAGRHGKAVHSSGVSLSKHDSSSSSRSRPVDSAYASMSTGRSSHAAHS---SLSSKSTSSQKVESYLRDTPDGLLPHHVVMTDKEK----KKLVVRRLEQLFTGKISGRNMQRIPSIPSMDAA. 342
10 -6.200PF00218.16; TRPG_NEUCR/252-514; Indole-3-glycerol phosphate synthase  ali follow..  15  40.........................................SLVDRLRNSPFDVALCAEIK----APSQARKYALAGASVISVLT-WFKGSIDDLRAVRQVLNGMPNRPAVLRILEARLAGADTVLLIVKMLEYELLERLYKYSLSLGMEPLV-EVQNTEEMATAIKLGAKVI--GVNPSDTFLCALSGINTHQDVKRDGVNGILVGEAIMRAPDATQFIREL.... 263

FFAS is supported by the NIH grant R01-GM087218-01
6 0 9 1 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Locations of visitors to this page
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.