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Query: gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKAFLGALEFQENEYEELKELYESLKTKQKPHTLFISCVDSRVVPNLITGTKPGELYVICNMGNVNPPKTSYKESLSTIASIEYAIAHVGVQNLIICGHSDCGACGSVHLIHDETTKAKTPYIANWIQFLEPVKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQEKASKNELKIFGWHYIIETGRIYNYNFESHFFEPIGETIKQRKSHENFLast
1 -86.000PF00484.17; Q28W87_JANSC/42-203; Carbonic anhydrase  ali follow..  26  1................................AMVIACCDSRVAINSVFGQRTGELFVHRNIANLVPPYTPDGNHHGTGAAVEFAVKHLKVEHILVMGHSNCGGVAGCISMCEPEFDQEESLIGRWLDVLRPGYQTVSDI----EDPKGRQTALEKEGIHVSLENLLGYPFVKSAVDAETLSLHGLWADIADMDL.......................... 162
2 -7.880PF00236.16; GLHA_HORSE/25-120; Glycoprotein hormone  ali follow..  21  22........................FFKLGVPIYQCKGCCFSRAYPTPARSRKT--MLVPKNITS-----------ESTCCVAKAFIRVTVMGNIKLENHTQC....................................................................................................................... 86
3 -7.480PF07519.9; Q8RLZ8_ACIAD/88-580; Tannase and feruloyl esterase  ali follow..  325......YPKLSATNSTYSESAMSFMIPPDELNLDKLRLHGGKM---IVVQGTADGVFSVDDTQNWYDKLMAKYKSSSLGDAQSF------ARFYRVPGMNHSRG------GLATDQFDALTALVNWVEYGQAPDQILASARGVGNASGEINSELPSSWSANRTRPLCPYPKIARYNGTGDSE....................................... 485
4 -7.190PF08538.8; Q5KNQ0_CRYNJ/1-293; Protein of unknown function (DUF1749 topsan)  ali follow..  31VVFIGGLTN--------AVPFTYPLSDALGKAGWKLIQFH------------------WSSAYGGYGTGSLDRDREEMQALVKYLKTTGGLSKVIIMGHS-TGSQNVMHYLSSSINNDPAYHVDGGIMQAPVSDREVCAKDKPYCDYLSLAEEMVKKGRGHEIMPDEFCKKAGFGGVEMKMTAYRLW.................................. 193
5 -6.890PF17207.1; G1X286_ARTOA/131-268; MCM OB domain  ali follow..  13  77YFILHEQCRFIDQQVLKLQEAPDQVPVGELPRHVLLSADR-----YLTNRVIPGSRCKVVGIFSI............................................................................................................................................................ 136
6 -6.370PF02273.13; C7BN06_PHOAA/8-301; Acyl transferase  ali follow..  10  39..............FARRMDHFAGLAEYLSQNGFHVIRYDSL------VGLSSGT-IDEFTMSIGK---------QSLLAVVDW-LNTRKINNLGMLASS--SARIAYASLSEIN-------VSFLITAVGVVNLRYTLERALGFDYLSLPIDELPDNLDFEGHKLGAEVFARDCFDSGWEDLTSTINSMMDIPFIAFTANNDDWVKQDEVITLLSSIRS. 223
7 -6.370PF08936.8; A5GS66_SYNR3/50-500; Carboxysome Shell Carbonic Anhydrase  ali follow..  81..VFETYQRISDQFFSDDPLAGNQGDAFEQ-LLDITPCADGRLAHAIALRIPLSCVRRRPHAGALFD--GYPNAAHDPTRYLKCVVYHFSSIDP---SHEGCAAHGSDDGLAVSAGMARLKAFREAVEKGFCCGASV-------------------DLLLIGLDTDTDAIRVHVPDRDGEASLDQWVDARELYAETLGLDSAAARAHIAAAVQAGCS.... 298
8 -6.370PF11187.6; Q5FMZ8_LACAC/74-299; Protein of unknown function (DUF2974 topsan)  ali follow..  3.................KSPRLGNIEILNWTNRLEKDPYPLQFTAATFRLDATTILIVYRGTDSSIIGWNEDYGQDVAANYLKEIAAKYPDDKIYLAGHSK-GGNYAEYALSVAEPALQDRVIKAFSFDGPGFFHQVWRSPGFVRALPKMKTYLPEASIIGTMLDHPERVIIVKSNAPMIQQHDPRRWSVGRDSFVLAEGLTSGSRSLKHSLID....... 207
9 -6.290PF01318.16; CAPSD_BMV/2-188; Bromovirus coat protein  ali follow..  13  7.......................KMTRAQRRAAARRNRWTARVQPVIVEPLAAGQGKAIKAAGYSISKWEASSDAITAKATNAMSIKELKVGRVLLLG-SVAGRIKACVAEKQAQAEAAFQVA---LAVADSSKEVVAAMYTDA-----------RGATLGDLLNLQIYLYASEAVPAKAVVVH..................................... 169
10 -6.140PF07224.9; CLH1_CITUN/19-322; Chlorophyllase  ali follow..  17  36...................IIVTPAEKGTFNVILFTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQEANVSLVAVMGHS--GGQTAFALSLRYGFGA....................................................................................................... 146

FFAS is supported by the NIH grant R01-GM087218-01
8 2 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.