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Query: gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTSKTKTPKSVLIAGPCVIESLENLRSIATKLQPLANNERLDFYFKASFDKANRTSLESYRGPGLEKGLEMLQTIKEEFGYKILTDVHESYQASVAAKVADILQIPAFLCRQTDLIVEVSQTNAIVNIKKGQFMNPKDMQYSVLKALKTRDKSIQSPTYETALKNGVWLCERGSSFGYGNLVVDMRSLKIMREFAPVIFDATHSVQMPGGANGKSSGDSSFAPILARAAAAVGIDGLFAETHVDPKNALSDGANMLKPDELEQLVTDMLKIQNLFLast
1 -12.900PF00793.15; AROG_HAEIN/32-347; DAHP synthetase I family  ali follow..  16  27.......DDRLLVVIGPCSIHDPKAAIEYATRLKPLREKYKLEIIMRVYFEKPRTT---GWKGLRLNDGLRIARKL-NDLGVPAAGEFLDMITPQYLADFMSWGAIGARTTESQVHRELASGLSCAVGFKNA---TNGGVKVALDAIGAAETKFGHSAIVSTKGNEDCHIILRGGDKGPNDVEKVCADIEKTGRIPHVMVDFSH------ANSSKQYKKQMDVCQDVCNQIAFGIFGVMVESH................................. 281
2 -11.500PF03102.9; A4Y8R3_SHEPC/37-279; NeuB family  ali follow..  15  63........................................................................LFDYAKSLGLVAFSTPFDLTAVEYLEKLVPCYKIASFENNDHALLAAVAKTGKPVIMSTGM-AEIHELAEAVTVLKQHGCR-------------DLILLKCTSHYPAEPVDANLSTIPHLAQLFDCQV-----------------GLSDHTQGIGVSIASVILGGTVIEKH-DRNEGGVDSEFSLEPREFKSLVMETERARVAL 238
3 -6.420PF07992.9; AHPF_ECOLI/214-494; Pyridine nucleotide-disulphide oxidoreductase  ali follow..  11  1........DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFG---------QILDTVDIENYISVPKTEGQKLAGALKVEYDVDVIDSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQD------LRSLKNVDIILNAQTTEVKGDGSKVVG--EYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEG....................... 247
4 -6.230PF07454.6; SP2P_BACSU/101-383; Stage II sporulation protein P (SpoIIP)  ali follow..  13  107..................ARHSKANVTLVGDMFGQALESQGIGATVKTDIQSKLNKKGLNYARSYDESRPVVKDALASNKNLQYIIDIHR----DSRRKKDTTATIKGKSYARVAFVVGKKSKNFEENYKIASELHPGLSTGVFSKGSPGDN-----GVYNQDLTDRALLLEFGGV---NNLEELQRAANAAAD.................................................................................. 279
5 -6.210PF04555.8; Q72WR9_DESVH/28-223; Restriction endonuclease XhoI  ali follow..  14  6..............................................SGKTDQGERAGVTA--GKNMDGFVELVLDIVRANGLA-----------ADIHQNKGLLTLPGFFTKLWDLLV----------ISEGQLIAAVEFKSQVGP--SFGNNFNNRAEEAIGTAHDFWTAYRDGAFGWLMLVEDAP-----ASRAAVQECSPHFPVFLEFKGASYIKRYDILASVIASPKNNCRLGQYSSLSP................................ 196
6 -5.720PF12652.2; A7B6L2_RUMGN/7-85; CotJB protein  ali follow..  21  1..........................................................................................................................................................................................................................RTELLNHINAVSFAVDEVKLYLDTHPQDPDALA......................... 33
7 -5.660PF01408.17; CBAC_COMTE/1-120; Oxidoreductase family, NAD-binding Rossmann fold  ali follow..  12  32..................................................................DTDPLSLRQFKADFPAA---AVHGDIESLCKNPDVEVVYIGTPHQFHAVHAEIALNAGKHVLVEKPMAVTLEDCCRMNACAQRAG............................................................................................................................. 113
8 -5.330PF02664.10; LUXS_HAEIN/2-162; S-Ribosylhomocysteinase (LuxS)  ali follow..  3.........................................................................................................LDSFKVDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHNGDSIEIIDISPMGCRTGFYMSLIGTPNSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNE............................... 156
9 -5.230PF03537.8; Q2Y694_NITMU/258-449; TM1410 hypothetical-related protein  ali follow..  14  80...................IRKLDILIPIMRARMEQAAQKGCDGVDPDNVDGYSNNTGFVLSYNDQLTYNVALAEAAHELGLAIGLK-NNLDQIKDLVNYFDAVNEECFQYSECDTLKPFVDAGKAV..................................................................................................................................................... 187
10 -5.040PF00809.17; DHPS_SHIFL/20-225; Pterin binding enzyme  ali follow..  16  17.....................SLIDAVKHANLMINAGATI---------IDVGGESTRPGAAEVSVEEELQVVEAIAQRFEVWISVDTSKPEVIRESAKVGAHIINDIRSLSEPGALEAAAETGLPVCLMHMQ--NPKTMQDVFAEVNRYFIEQIARCEQAGIAKEKLLL-DPGFGFGLSHNYSLLARLAEFHHFNPLLVGMSRK....................................................................... 202

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.