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15644637
Query: gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTSKTKTPKSVLIAGPCVIESLENLRSIATKLQPLANNERLDFYFKASFDKANRTSLESYRGPGLEKGLEMLQTIKEEFGYKILTDVHESYQASVAAKVADILQIPAFLCRQTDLIVEVSQTNAIVNIKKGQFMNPKDMQYSVLKALKTRDKSIQSPTYETALKNGVWLCERGSSFGYGNLVVDMRSLKIMREFAPVIFDATHSVQMPGGANGKSSGDSSFAPILARAAAAVGIDGLFAETHVDPKNALSDGANMLKPDELEQLVTDMLKIQNLFLast
1 -12.900PF00793.15; AROG_HAEIN/32-347; DAHP synthetase I family  ali follow..  16  27.......DDRLLVVIGPCSIHDPKAAIEYATRLKPLREKYKLEIIMRVYFEKPRTT---GWKGLRLNDGLRIARKL-NDLGVPAAGEFLDMITPQYLADFMSWGAIGARTTESQVHRELASGLSCAVGFKNA---TNGGVKVALDAIGAAETKFGHSAIVSTKGNEDCHIILRGGDKGPNDVEKVCADIEKTGRIPHVMVDFSH------ANSSKQYKKQMDVCQDVCNQIAFGIFGVMVESH................................. 281
2 -11.500PF03102.9; A4Y8R3_SHEPC/37-279; NeuB family  ali follow..  15  63........................................................................LFDYAKSLGLVAFSTPFDLTAVEYLEKLVPCYKIASFENNDHALLAAVAKTGKPVIMSTGM-AEIHELAEAVTVLKQHGCR-------------DLILLKCTSHYPAEPVDANLSTIPHLAQLFDCQV-----------------GLSDHTQGIGVSIASVILGGTVIEKH-DRNEGGVDSEFSLEPREFKSLVMETERARVAL 238
3 -6.420PF07992.9; AHPF_ECOLI/214-494; Pyridine nucleotide-disulphide oxidoreductase  ali follow..  11  1........DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFG---------QILDTVDIENYISVPKTEGQKLAGALKVEYDVDVIDSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQD------LRSLKNVDIILNAQTTEVKGDGSKVVG--EYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEG....................... 247
4 -6.230PF07454.6; SP2P_BACSU/101-383; Stage II sporulation protein P (SpoIIP)  ali follow..  13  107..................ARHSKANVTLVGDMFGQALESQGIGATVKTDIQSKLNKKGLNYARSYDESRPVVKDALASNKNLQYIIDIHR----DSRRKKDTTATIKGKSYARVAFVVGKKSKNFEENYKIASELHPGLSTGVFSKGSPGDN-----GVYNQDLTDRALLLEFGGV---NNLEELQRAANAAAD.................................................................................. 279
5 -6.210PF04555.8; Q72WR9_DESVH/28-223; Restriction endonuclease XhoI  ali follow..  14  6..............................................SGKTDQGERAGVTA--GKNMDGFVELVLDIVRANGLA-----------ADIHQNKGLLTLPGFFTKLWDLLV----------ISEGQLIAAVEFKSQVGP--SFGNNFNNRAEEAIGTAHDFWTAYRDGAFGWLMLVEDAP-----ASRAAVQECSPHFPVFLEFKGASYIKRYDILASVIASPKNNCRLGQYSSLSP................................ 196
6 -5.720PF12652.2; A7B6L2_RUMGN/7-85; CotJB protein  ali follow..  21  1..........................................................................................................................................................................................................................RTELLNHINAVSFAVDEVKLYLDTHPQDPDALA......................... 33
7 -5.660PF01408.17; CBAC_COMTE/1-120; Oxidoreductase family, NAD-binding Rossmann fold  ali follow..  12  32..................................................................DTDPLSLRQFKADFPAA---AVHGDIESLCKNPDVEVVYIGTPHQFHAVHAEIALNAGKHVLVEKPMAVTLEDCCRMNACAQRAG............................................................................................................................. 113
8 -5.330PF02664.10; LUXS_HAEIN/2-162; S-Ribosylhomocysteinase (LuxS)  ali follow..  3.........................................................................................................LDSFKVDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHNGDSIEIIDISPMGCRTGFYMSLIGTPNSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNE............................... 156
9 -5.230PF03537.8; Q2Y694_NITMU/258-449; TM1410 hypothetical-related protein  ali follow..  14  80...................IRKLDILIPIMRARMEQAAQKGCDGVDPDNVDGYSNNTGFVLSYNDQLTYNVALAEAAHELGLAIGLK-NNLDQIKDLVNYFDAVNEECFQYSECDTLKPFVDAGKAV..................................................................................................................................................... 187
10 -5.040PF00809.17; DHPS_SHIFL/20-225; Pterin binding enzyme  ali follow..  16  17.....................SLIDAVKHANLMINAGATI---------IDVGGESTRPGAAEVSVEEELQVVEAIAQRFEVWISVDTSKPEVIRESAKVGAHIINDIRSLSEPGALEAAAETGLPVCLMHMQ--NPKTMQDVFAEVNRYFIEQIARCEQAGIAKEKLLL-DPGFGFGLSHNYSLLARLAEFHHFNPLLVGMSRK....................................................................... 202

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.