current user: public




Query: gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .
# Score Template Links and tools%idFirst MKTSKTKTPKSVLIAGPCVIESLENLRSIATKLQPLANNERLDFYFKASFDKANRTSLESYRGPGLEKGLEMLQTIKEEFGYKILTDVHESYQASVAAKVADILQIPAFLCRQTDLIVEVSQTNAIVNIKKGQFMNPKDMQYSVLKALKTRDKSIQSPTYETALKNGVWLCERGSSFGYGNLVVDMRSLKIMREFAPVIFDATHSVQMPGGANGKSSGDSSFAPILARAAAAVGIDGLFAETHVDPKNALSDGANMLKPDELEQLVTDMLKIQNLFLast
1 -11.500PF00793.18; AROG_HAEIN/32-347; DAHP synthetase I family  ali follow..  18  21.NIIHGKDDRLLVVIGPCSIHDPKAAIEYATRLKPLREKYKLEIIMRVYFEKPRTT---GWKGLRLNDGLRIARKL-NDLGVPAAGEFLDMITPQYLA---DFMSWGAIGARTTESQVLASGLSCAVGFKNA---TNGGVKVALDAIGAAETKFGHSAIVSTKGNEDCHIILRGGDKGPNDVEKVCADIEKTGRIPHVMVDFSH------ANSSKQYKKQMDVCQDVCNQIAFGIFGVMVESH................................. 281
2 -8.320PF03102.12; B5EDU0_GEOBB/30-266; NeuB family  ali follow..  11  57........................................................................VFDYIRAKGLDWFSTPSHEADVDLLDRLVSAYKIGSDDAVNIPFLRYVAAKGKPVLLATG-MCTMQEVRESVDVILGAGNL-------------ELILLHAVTSYPTHPEHVNLLAMQALAREFNLPV-----------------GYSDHTIGTVACLGAAALGAAVLEKHFTTDKNAEDHILSADPAEMRTIVEQVRTLEAMM 232
3 -6.740PF03416.17; U9T4F5_RHIID/197-472; Peptidase family C54  ali follow..  10  12.........................................IWCTYRHNYAPIKPTHFTNDGGWGLRSSQSLLANLGREWRRINRGEDSWDRYVEILAWFIDDMSSRCPFS-----VHRVALLGKQLGKNIGEWFGPLTASQVIKALVEDYSAAVTDGVVYKNEVYKVAKNNRSGRDFFQSVLILVSTRLGTDNLNPKYYDALKAYFRFPHSVGIAGGKPS------SSYYFIGTQGFYLDPHEEMATFHCDTLRKIPISQLDPSM.......... 258
4 -6.110PF02906.12; A7GE97_CLOBL/229-513; Iron only hydrogenase large subunit, C-terminal domain  ali follow..  12  27............................VTGKMVAALRQLGFSKVFDTDF-AADLT---------MEEASEFIHRLEHGGTLPMLTSCCPGWIKFFEHNFNDLMDIPSSCKSPQQMFGAIAKSAEKMKVDPKDIIVVSVMPCLAKKYEAKREEMKRNGIPD-------------------DIVISTRELAKMIVEAGIDFNSLQEEEFDNPLGQSTG-----------ASVIFGTTGGVMEAALRTAYEWVTKGTLKDVE................ 222
5 -6.100PF00809.20; DHPS_NEIMB/21-266; Pterin binding enzyme  ali follow..  14  1..MGIVNLTPDSFSDGGVYSQNAQTALAHAEQLLKEGADI---------LDIGGESTRSGADYVSPEEEWARVEPVLAGWGVPISLDTRRTVIMEKALALIDIINDVAALNDEGAVELLARQADTGICLMHMQ--LPKTMQDVVGEVARYLKARSAECIAAGIAPQRIIL-DPGFGSGFGKPLQHNIALELMAETGFPLLIGVSRKSTIGELTGEANAAERVHGSVAAALASVARGAQIVRVH................................. 246
6 -6.040PF12706.5; I3ZD26_TERRK/61-263; Beta-lactamase superfamily domain  ali follow..  12  1............................................................................RNLLVDPVFERLVLLRRQRPGILIDHLPPVDAVLLTHAHMDHLNLPSLRKRHATKLTVIVPKGVADLVENLGFRSVTELEWWQTTALADEPVSITMTPARHWGARMFKDTHRQ-----GGYVIAGAGHSVYHSGDTAYFGH-GQRLQPQIALLPIGAYFPDSYRAVHTSPEEAL.......................... 171
7 -5.630PF07454.9; C5D4U7_GEOSW/103-381; Stage II sporulation protein P (SpoIIP)  ali follow..  10  104..................AFHRTVNVTKVGEKLAEEMEKRGIGAEVTIDIVGELQKKGMKYYQAYDMSRKTVVEAMSRNHDLQYLIDIHR----DSRRRKYTTVTINGVDYARVAFIIGGENAKYEKNLQLATQLHPGLSRGIIEKKGAETN-----GKFNQDLSENAILIEFGGV---NTFEELFRSVSAVADV................................................................................. 277
8 -5.520PF16707.3; CAGS_HELPY/1-196; Cag pathogenicity island protein S of Helicobacter pylori  ali follow..  13  31...................LLSTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA------------VIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSI----LGIFLPFFSKPIMFKMSIREMDSQIELYGTKLPLLKLFVMTDEEMNFYANLKTIEQYNDYVRDL.......................................................................................... 181
9 -5.310PF03251.11; P69_TYMV/1-468; Tymovirus 45/70Kd protein  ali follow..  12  1MSLPISIGRPCTHDSQRSLSAPDSRIHSGFNS--------LLDTDLPMVHSEGTSTPTQLLRHPNINRDFSPLHPLVFPGHHSQLRHVHETQQVQQTCKLSGAEELPPAPQRQHSLITRPSRFPHHFHARRPDVLPSVPDHGPVLTETKPRTSVRQPRSATRGPSFRPILLPKVVH------VHDDPPHSSLRPRGS----RSRQLQPTVRRPLLAPNQFHSPRQPPPLSDDPGILG---PLAPHSTRDPPPRPIT.................... 260
10 -4.920PF13507.4; C7RAB1_KANKD/1042-1297; CobB/CobQ-like glutamine amidotransferase domain  ali follow..  10  37............ILSGRVSLQDFTGAVACGGFSYGDVLGAGEGWAKSILFNSRARDEFEAF-SLGICNGCQMMSNLKELI--------NQSAQFEARFAMVEVAKSPSL------FMTGMEGSRLPIAVSHGEGRAEFKSEDLANQVNESGLVTARYINNYGDIADTYPANPNGSPFGITGLTTTDGRVTIMMPHPERVARTVQNSWRPDEWREDGAWQRMF...................................................... 249

FFAS is supported by the NIH grant R01-GM087218-01
8 5 6 7 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.