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Query: gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQIIEGKLQLQGNERVAILTSRFNHIITDRLQEGAMDCFKRHGGDEDLLDIVLVPGAYELPFILDKLLESEKYDGVCVLGAIIRGGTPHFDYVSAEATKGIAHAMLKYSMPVSFGVLTTDNIEQAIERAGSKAGNKGFEAMSTLIELLSLCQTLKGLast
1 -94.600PF00885.17; R7PPI3_9FIRM/12-151; 6,7-dimethyl-8-ribityllumazine synthase  ali follow..  50  1............SIRVGIVASRFNEIIVSKLIDGAVDGLSRHGVDLDTVDLAWVPGAFEVPLTAQKMAQSGRYDAVICLGAVIRGETDHYEHVASEVTKGIAQVALRADIPILYGILTTDTVEQALNRAGLKAGNKGFECAMDAIELTNLFK.... 140
2 -6.930PF00697.20; TRPF_YEAST/24-221; N-(5`phosphoribosyl)anthranilate (PRA) isomerase  ali follow..  10  44........SGTPKYLVGVFRNQPKEDVLALVNDYGIDIVQLHGDESWQIKRLVFPKDCNI---LLSAASQKPHSFIPLFDSEAGGTGELLDW--NSISDWVGRQESPESLHFMLGGLTPENVGDALRLNGVIGVDVSGGVETNGVKDSNKIANF.. 195
3 -6.910PF00532.19; MALI_ECOLI/64-342; Periplasmic binding proteins and sugar binding domain of LacI family  ali follow..  11  113......HLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSDWVLECTSSQKAEAITALLRHNPTISAVVCYNETIAMGA----FGLLKAGRQSGESGVDRYFEQQVSLAAFTDATPTASTPARELGITLADRMMQKIT.......... 260
4 -6.820PF11679.6; B8GNL4_THISH/2-199; Protein of unknown function (DUF3275 topsan)  ali follow..  16  1.......ITLPGQLAIKTIHGRNGDFNVGRLATSI--------------------GEFVIKNAELDQYREGKYEGDFVITEIRPSTYNTSGRMVIEIRAHLGGMTLSN................................................ 81
5 -6.260PF13377.4; A1A0J9_BIFAA/171-340; Periplasmic binding protein-like domain  ali follow..  12  3......FLKSLGHKTLAYIEQPINTCSDRLRKKGFSEASQACGYADEDIIV--MPSLSHIDARSEQDIYSGIVAQLLSAPKQPTAICVSVDAVAAPLLKELRRMGWR--VPQDVSLVGFDDDDTATALDLTTMHQDPAEIGRIAARK--TLALLNG 150
6 -6.190PF00112.21; CYSP4_BRANA/100-315; Papain family cysteine protease  ali follow..  15  39.KIVTGELVSLSEQELVDCDKSYNQGCNGGLMDYAFQFIMKNGSLLKNSRVVTIDGYEDVPSKDETALKRAVSYQPVSVA--IDAGGRAFQHYQSGIFTGKCGTNMDHAVVAV-GYGSENGVDYWIVR-GTRWGEDGY.................. 192
7 -6.190PF11736.6; B3PG09_CELJU/30-211; Protein of unknown function (DUF3299 topsan)  ali follow..  20  94...................................................VRLPG-YVVPLSYNDKQHVTEFFLVPYFGACIHVPPP--QIIYVSYPKGFTLPDLYTPFWVQ-GTMKIATKEHELGVSS.......................... 171
8 -5.970PF09861.7; Q3AFZ6_CARHZ/7-206; Domain of unknown function (DUF2088 topsan)  ali follow..  13  50........IAKPGEKIAIITSDITRPVNKILLPLVLEELWQAGVKDEDITIVFALGSHR-EIYHRIKCIDSDQRDCVRLGYTKFGTPVD-----------VFRPVAEADRRICLGNIEYHYF------AGYSGGAKAIMPGVSSREAI........ 185
9 -5.960PF15498.4; G3R6N2_GORGO/55-710; Nephrin and CD2AP-binding protein, Dendrin  ali follow..  17  558...............................LREAVSRIRRHTAPDSDTD--------EAEELSVHSGSSDGSDT--APGASWRNERTLPGVGNSSPEEDGKTAELSDSVGEILDVITEEVLFGVRDIRGTQQANR.................... 655
10 -5.920PF01451.19; PAP_BACSU/3-142; Low molecular weight phosphotyrosine protein phosphatase  ali follow..  12  3...........................................................................FVCTGNTCRSPMAEALFKSIAEREGLNVNVRSAGVFASPNGKATPHAVEALFEKHIALNHVSSPLTEELMESADLVLAMT. 82

FFAS is supported by the NIH grant R01-GM087218-01
8 5 8 8 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.