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15644636
Query: gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQIIEGKLQLQGNERVAILTSRFNHIITDRLQEGAMDCFKRHGGDEDLLDIVLVPGAYELPFILDKLLESEKYDGVCVLGAIIRGGTPHFDYVSAEATKGIAHAMLKYSMPVSFGVLTTDNIEQAIERAGSKAGNKGFEAMSTLIELLSLCQTLKGLast
1 -88.500PF00885.14; Q5FS93_GLUOX/14-155; 6,7-dimethyl-8-ribityllumazine synthase  ali follow..  38  1..........SPAPKMAIVVSRFNTNITGGLKNGSLEWLEERGI--TDVDVYDAPGAFELPLLAQRLAKSGKYEGVICLGCVIKGDTAHFEFISLGATIGIMQAQLATEVPIAFGILTTYTEQQAVDRSRKDAENKGREAAAACVESVAFLRNV.. 142
2 -6.340PF05234.6; RRN10_YEAST/1-120; UAF complex subunit Rrn10  ali follow..  11  9...............................CSNIIKEFGTHVVSADEVLAEKIDNAVPIPFKTREEIDADVEK----LRVVHYYATQLCLNKYPHLINAFDETSL-----ITLGLLIEKWVKDYLTSIQTEQGRQ.................... 120
3 -6.300PF00532.16; MALI_ECOLI/64-342; Periplasmic binding proteins and sugar binding domain of LacI family  ali follow..  11  113......HLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSDWVLECTSSQKAEAITALLRHNPTISAVVCYN----------ETIAMGAWFGLLKAGRQSGFEQQVSLAAFTDATPTVTWASTPARELGITLADRMMQKIT....... 260
4 -6.250PF09470.5; TELT_BOVIN/1-166; Telethonin protein  ali follow..  11  57...........................CQALVQRSPWLVMRMGILGRGLQEYQLPYQRVLPLPIFTPAKVGTKEEREETPIQLQELLALETALGGQCVDRQDVAEITKQLPPVVPVSKPGTLRRSLSRSMSQEAQRG................... 166
5 -6.250PF00697.17; TRPF_YEAST/24-221; N-(5`phosphoribosyl)anthranilate (PRA) isomerase  ali follow..  10  51...............VGVFRNQPKEDVLALVNDYGIDIVQLHGDESWQIKRLVFPKDCNI---LLSAASQKPHSFIPLFDSEAGGTGELLDW--NSISDWVGRQESPESLHFMLGGLTPENVGDALRLNGVIGVDVSGGVETNGVKDSNKIANF.. 195
6 -5.910PF03558.8; Q1L723_9TOMB/1-189; TBSV core protein P21/P22  ali follow..  15  2............DTEYEQVNKPWNELYKEATLGNKLTV----NVGMEDVEVPLLPSNF-IPLVSRKAGVSGKLTELLDLGKEIRLTMQHLDF----------SVSARSDVPIVFG......................................... 126
7 -5.890PF00112.18; CYSP4_BRANA/100-315; Papain family cysteine protease  ali follow..  13  39.KIVTGELVSLSEQELVDCDKSYNQGCNGGLMDYAFQFIMKNGSLLKNSRVVTIDGYEDVPSKDETALKRAVSYQPVSVA--IDAGGRAFQHYQSGIFTGKCGTNMDHAVVAVYGSENGVDYWIVRNSWGTRWGEDGY.................. 192
8 -5.840PF10536.4; Q94HR1_ORYSA/152-532; Plant mobile domain  ali follow..  18  1.......................................................GLLGVALVVSRGMPVFNAPALTALVDRWRPETHSFHLPSGEMTITLQDVAMILALPLQGHVVTRAQVEQLFGIPLNIEQGQGGKKKQNGIPLSWLSQNFS. 108
9 -5.680PF06184.6; COAT_SPMV/5-157; Potexvirus coat protein  ali follow..  10  10.....GSRAAATSLVYDTCYVTLTERATTSFQRQSFPTLKGMGDRAFQVVAFTIQGVSAAPLMYNRLYNPGDTDSVHATGVQLMGTVPRTVRLTPRVGQNNWFFGNTEEAETILAIDGLVSTKGANAPSNTVIVTGCFRLAPSELQSS........ 153
10 -5.680PF08779.5; NS7A_CVHSA/16-99; SARS coronavirus X4 like  ali follow..  12  19............................................................PCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHTYQLRARSVSPKLF--IRQEEVQQEL.............................. 82

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.