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anford Burnham Prebys Medical Discovery Institute
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Query: gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .
# Score Template Links and tools%idFirst MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKTKTKCYRALast
1 -7.3301cii_A mol:protein length:602 COLICIN IA  ali model follow..  17  537.....VRTENWRPLFVKTETIIAGNAATALVALVFSIL-----TGSALGIIGYGLLMAVTGALIDESLVEKA............... 598
2 -7.2601rh1_A mol:protein length:511 Colicin B  ali model follow..  11  435.....YQTGNWGPLMLEVESWVISMASAVALSLFSLTLGSALIAF-TVVGFVGVVIAGAIGAFIDDKFVDELNHKI........... 509
3 -6.8401fjg_N mol:protein length:61 30S RIBOSOMAL PROTEIN S14  ali model follow..  17  34YRFFGLCRICLRELAHKGQLPGVRKASW........................................................... 61
4 -6.1703j9y_n mol:protein length:102 30S ribosomal protein S14  ali model follow..  21  80.....LSRIKVREAAMRGEIPGLKKASW........................................................... 102
5 -6.1504b1b_A mol:protein length:542 THIOREDOXIN REDUCTASE  ali model follow..  16  211.............ITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRGFDQQCAVKVKLYMEEQ........ 276
6 -6.1502zz0_A mol:protein length:513 Thioredoxin reductase 1, cytoplasmic  ali model follow..  21  186.............ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEH........ 251
7 -6.1202j3n_A mol:protein length:519 THIOREDOXIN REDUCTASE 1  ali model follow..  21  192.............ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEH........ 257
8 -6.1002nvk_X mol:protein length:488 Thioredoxin Reductase  ali model follow..  19  175.............ITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASMEER........ 240
9 -6.0901h6v_A mol:protein length:499 THIOREDOXIN REDUCTASE  ali model follow..  21  178.............ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEH........ 243
10 -6.0702cfy_A mol:protein length:521 THIOREDOXIN REDUCTASE 1  ali model follow..  21  194.............ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEH........ 259

FFAS is supported by the NIH grant R01-GM087218-01
1 1 0 2 4 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.