current user: public
anford Burnham Prebys Medical Discovery Institute

Query: gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190
# Score Template Links and tools%idFirst MKKFLFKQKFCESLPKSFSKTLLALSLGLILLGIFAPFPKVPKQPSVPLMFHFTEHYARFIPTILSVAIPLIQRDAVGLFQVANASIATTLLTHTTKRALNHVTINDQRLGERPYGGNFNMPSGHSSMVGLAVAFLMRRYSFKKYFWLLPLVPLTMLARIYLDMHTIGAVLTGLGVGMLCVSLFTSPKKPLast
1 -34.4004px7_A mol:protein length:262 Phosphatidylglycerophosphatase  ali model follow..  15  1.......GRSIARRTAVGAALLLVMPVAVWISGWRWQPGEQSWLLKAAFWVTETVTQPWGVITHLILFGWFLWCLRFRFAILAAAILVGQGVKSWIKDKVQEPRPF-AEEKNIPKETGFAFPSGHTMFAASAVGLLWPRRRTLTIAILLVWATGVMGSRLLLGMHWPRDLVVATLISWALVAVATWLAQ. 231
2 -29.8002ipb_A mol:protein length:230 Class A nonspecific acid phosphatase PhoN  ali model follow..  14  61......................................................ENIARIFSPVVGAKINPKDTPETWNMLQNLLKMGGYYATASAKKYYMRTRPFVLFNHSTCRRKDGSYPSGHDAYSTLLALVL-SQARPERAQELARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEF......... 193
3 -27.9002a96_A mol:protein length:250 class A nonspecific acid phosphatase PhoN  ali model follow..  13  90...............................................................VVGAKISPKDTPETWNMLQNLLKVGGYYATASAKKYYMRTRPFVLFNHSTTLRKDGSYPSGHTAYSTLLALVLSQARPERAQ-ELARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEF......... 213
4 -24.8001d2t_A mol:protein length:231 ACID PHOSPHATASE  ali model follow..  16  82...............................................................AFGSPITEKDAPALHKLLTNMIEDAGDLATRSAKDHYMRIRPFAFYGVSTCNSKNGSYPSGHTSIGWATALVLAEINPQRQN-EILKRGYELGQSRVICGYHWQSDVDAARVVGSAVV......... 205
5 -19.2004cit_A mol:protein length:458 VANADIUM-DEPENDENT HALOPEROXIDASE  ali model follow..  16  310................................................................................KASVAMADAFISCWDEKYRSNLIRPDDSWKPVLQTPPFPEYTSGHSVVSGAASVVLTEVFGDNFSFDDDTAADEAAISRMYGGIHYRAAIEVGVKQGRDLGTFVVNKLH. 442
6 -18.3001idq_A mol:protein length:609 VANADIUM CHLOROPEROXIDASE  ali model follow..  15  337................................................................................LVDVACTDAGIFSWKEKWEFEFWRPNTNDIPFKPP----AYPSGHATFGGAVFQMVRRYYNGRVHFDSAWELM-NAISRIFLGVHWRFDAAAARDILIPTTTKDVYAVD. 520
7 -17.7001qhb_A mol:protein length:596 HALOPEROXIDASE  ali model follow..  15  480.......................................................................................................................SYGSGHAVVAGACVTILKAFFDANFQIDQVFLADNVAIGRNMAGVHYFSDQFESLLLG---EQIAIGILEE 573
8 -17.7003w35_A mol:protein length:531 NapH1  ali model follow..  13  359...............................................................................LAHVLATFEPLIAAWHHKTRFDAVRPVTA-SSYLPVGDHPEYPSGSTSLCSATSQAARRYFD---HIPTWTFTRTCATSRVWGGVHFQTTVDRTIDFGEQFGDLAHEFVQ. 522
9 -17.5001qi9_A mol:protein length:556 PROTEIN (VANADIUM BROMOPEROXIDASE)  ali model follow..  21  413.......................................................................................................................SYPSGHATQNGAFATVLKALIGLDRGGDCYPLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTL..... 506
10 -17.0001up8_A mol:protein length:598 VANADIUM-DEPENDENT BROMOPEROXIDASE 1  ali model follow..  15  482.......................................................................................................................SYGSGHAVVAGACVTILKAFFDSGIEIDQVFLADNIAIGRNMAGVHYFSDQFESLLLG---EQVAIGILEE 575
11 -13.1005AA6 Entity 1(prereleased)  ali follow..  22  426.......................................................................................................................AYPSGHAINLGAYLTVLKAFLGFELGQRCFPVTSNVAIGRSHLGVHWRMDGVFGAEMG............. 528
12 -9.5804v14_A mol:protein length:138 MUTATOR MUTT PROTEIN  ali model follow..  11  3...........................................................................................RIHIVAGIIFNSDQSEIFITKRPDHLHKGFPGGKVEAGESREQAMVRELEEEIGITVTEQQAFQHFDFDYTDKSLSFDFFDGQPHG............. 97
13 -9.3501mut_A mol:protein length:129 NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE  ali model follow..  12  1.................................................................................MKKLQIAVGIIRNENNEIFITRRAADAHM-----ANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWEGEPWG............. 96
FFAS is supported by the NIH grant R01-GM087218-01
9 5 7 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.