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Query: gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQEFLGFGVVGNFAGHLEQAGESHSFINMKSEEKDAPKGLFPFYIPYENCYLGRCCIDNHKIILPSDLDLRVQAEPEIALECDVKYDEKHLVAKLVPNFFMAFNDASVRNLDAAKLSQKKNFSPASKGIGQKLPIDRFVYGGVCNNFSIASFLKYNNVWHIYGENSKLLKYEFFYQKLLDWIKDQLNHQQDGDSLEALRPFLERHNFPTKMIFAIGATPYMPFAQEHFLQKGDEVVIVAYNHLQYSFEKIQNLLEEDALQAKEHANLSYVYQIVELast
1 -9.5003r6o_A mol:protein length:329 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase  ali model follow..  14  98.GQVIALGF--NYPTHSD-------------TDSPLPKMADPVVFMKSPTSIS----PRDAVIAPRTSH-ALDYEIEIAVVIGKPGYRIERSQAIKHVAYMLANDITARDVALPFFGGSPLQAQVVRGKG----YPTFCPTGDTTFETFDFELRINGELRQSGSTVDMT---LGFAEVVETVSATIALRAGD-------------------IILTGTPGGCGFQFDRYLRPGDVIEAHS.................................... 302
2 -9.2101nkq_A mol:protein length:259 Hypothetical 28.8 kDa protein in PSD1-SKO1 in  ali model follow..  16  13......ICIGRNYAAHIKELNNSTPFFFLKPTSSIVTPLLVKTTRPANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVNVTKMKPEEVYDSI-SGVALALDLTARNVQDEAKKKGLPW-TISKGFDTFMPISAIVSREKFSSYKFRVKCSVNGQLRQDGGTNLML---HPLHKILQHISTMISLEPGD---------IILTGTPA----GVGE-----------LKPGDRVHCELLQNND............................... 238
3 -8.8701saw_A mol:protein length:225 hypothetical protein FLJ36880  ali model follow..  14  22......VCVGRNYADHVREMRSAVL---------SEP-----LFLKPSTAYAP----EGSPILMPAYTR-NLHHELELGVVMGKRCRAVPEAAAMDYVGYALCLDMTARDVQDECKKKGLPW-TLAKSFTASCPVSAFVPKEKIPDPHKLKLLKVNGELRQEGETSSMI---FSIPYIISYVSKIITLEEGD---------IILTGTPK----GVGP-----------VKENDEIEAGI.................................... 210
4 -8.8503lzk_A mol:protein length:359 Fumarylacetoacetate hydrolase family protein  ali model follow..  17  102............YVNHVELVRKARN-AEMPASFWTDP-----IYQGGSDSFLG----PRDPILMADDAW-GIDMEGEAAVIVDVPMGATLDEAKAAIRLVMLVNDVSLRGLIPGEL--AKGFGYQSKPSSAFSPVEELGEAWDGGKLHLPLHVDLNGE--PFGRANAGIDMTFDFPQLIVHAARTVSNKLEGGP----GRPVSEGGAGYSCIAELRMIETIEGGATQFLKFGDVVRIEMKDRTGHS............................. 338
5 -8.6701wzo_A mol:protein length:246 HpcE  ali model follow..  18  44.GKILGVAL--NYADHAEELG---------LSRPEEP-----LFWKPNTSLLP----HKGVVLYPKGAR-FVHYEVELAVVVGRPMKRVRAKDALDYVLYTIANDLVARD----VTNTFRPP-IRAKGRDTFLPLGPLVVEEVEDPQDLWLRAYVNGELRQEGHTSRML---YSVAELLEFISEFMTLEPYD-------------------VLLTG----TPKG-ISQVRPGDVMRLEI.................................... 232
6 -8.5403v77_A mol:protein length:224 Putative fumarylacetoacetate isomerase/hydrol  ali model follow..  16  19......VCVGRNYAAHAKELNN---------PIPSSP-----LFIKPASSAVP----FGPVFSIPKDQG-SVHHELEIAILIGKALSRASTEQVAESIAIGLGLDLTLRDVQDQLKEKGHPW-ERAKSFDGACPLTEFVAVNLAEWQAIGLTLEKNGQFQQQGSSAEML---FPILPLIAHMSEHFSLQPGD---------VILTGTPA----GVGP-----------LEVGDSLSAKL.................................... 209
7 -8.2803s52_A mol:protein length:221 Putative fumarylacetoacetate hydrolase family  ali model follow..  17  23......VCVGSNYAEHIKEMGSTAS---------VEP-----LFIKPETALCD----IRQPVSIPKDFG-SVHHEIELAVLIGTPLKQASEDRVARAIAYGVALDLTLRELQAGFKKAGQPW-EKAKAFDGSCPISGFIPVAEFGDAQQADLLTINGEIRQQGNTRDMI---TPIIPLISYMSRFFTLRAGD---------IVLTGTPQ----GVGP-----------MQSGDMLKIML.................................... 211
8 -8.2601nr9_A mol:protein length:223 Protein YCGM  ali model follow..  16  22......VCVGSNYAKHIKEMGSAVP---------EEP-----LFIKPETALCD----LRQPLAIPSDFG-SVHHEVELAVLIGATLRQATEEHVRKAIAYGVALDLTLRDVQGKMKKAGQPW-EKAKAFDNSCPLSGFIPAAEFDPQNTTLSLSVNGEQRQQGTTADMI---HKIVPLIAYMSKFFTLKAGD---------VVLTGTPD----GVGP-----------LQSGDELTVTF.................................... 211
9 -8.2102q18_X mol:protein length:293 2-keto-3-deoxy-D-arabinonate dehydratase  ali model follow..  18  74.PEVWGSGI--SYEMARERYSEENV-KTIYEKVYDAVRPEI-FFKATPNRCVG----HGEAIAVRSDSE--TLPEPELAVVLD----SNGKILG-----YTIMDDVSARDLEA----ENPLYLPQSKIYAGCCAFGPVTSDEIKNPYSLDITLKIVREGRFFEGSVNTNKMRRKIEEQIQYLIRDNP-------------------IPDGTILTTGTA-----GRDKGLKDEDIVEITI.................................... 276
10 -7.8902dfu_A mol:protein length:264 probable 2-hydroxyhepta-2,4-diene-1,7-dioate  ali model follow..  15  51......VCVGRNYREHIREMGHDFG--------EDLPKEPGLFLKGPNALARPGNPRTAEPVPYPFFTE-ELHYEGELAVVVGDRMRHVPPEKALDHVLYTVAVDITARD-----VQKKDLQWVRAKSADKFLPLGPWLETD-LNPQDTWVRTYVNGTLRQEGHTSQMI---FSVAEILSYISTFMTLEPLD-------------------VVLTG----TPEG----LRPGDRLEVAV.................................... 246

FFAS is supported by the NIH grant R01-GM087218-01
8 2 8 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics. 2001 Mar;17(3):282-3.