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anford Burnham Prebys Medical Discovery Institute
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Query: gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .
# Score Template Links and tools%idFirst MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKTKTKCYRALast
1 -7.050sp|Q6ZNA5|FRRS1_HUMAN Ferric-chelate reductase 1 OS=Homo sapiens GN=FRRS1 PE=2 SV=2 (Range: 502-569)  ali follow..  14  11...........................WKTYAMTGFVAW---HVGTEVVLEVHAYRLSRKVEILDDDRIQILQSFTAVETEGHAF.. 65
2 -6.640tr|B4DED9|B4DED9_HUMAN Uncharacterized protein OS=Homo sapiens GN=MAPK8IP2 PE=2 SV=1 (Range: 1-64)  ali follow..  46  27.........................................................ISLEEFDDEDLSEIT............... 41
3 -5.450sp|Q9Y2G1|MRF_HUMAN Myelin gene regulatory factor OS=Homo sapiens GN=MRF PE=1 SV=3 (Range: 758-829)  ali follow..  19  13.........................................IALVVVMAFSVVSMSTLYVLSLRTEE.................... 38
4 -5.440tr|C9K0R2|C9K0R2_HUMAN Uncharacterized protein OS=Homo sapiens GN=TMTC4 PE=4 SV=1 (Range: 1-73)  ali follow..  13  42.............................................KLVVGSVAIVCFARSYDFVFDDSEAIVNNK............ 73
5 -5.350sp|Q92541|RTF1_HUMAN RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens GN=RTF1 PE=1 SV=4 (Range: 486-564)  ali follow..  29  1.............................................................KFNDQDIEEIVKEKERFRKAPPNY.. 24
6 -4.670sp|O60725|ICMT_HUMAN Protein-S-isoprenylcysteine O-methyltransferase OS=Homo sapiens GN=ICMT PE=1 SV=1 (Range: 89-163)  ali follow..  35  2............................................WSHFGWYMCSLSLFHYSEYL....................... 21
7 -4.480sp|Q86VZ5|SMS1_HUMAN Phosphatidylcholine:ceramide cholinephosphotransferase 1 OS=Homo sapiens GN=SGMS1 PE=1 SV=2 (Range: 359-419)  ali follow..  10  19.........................................................YRPFQYFEKNVQGIVPRSYH.......... 38
8 -4.430sp|Q9HAT1|LMA1L_HUMAN Protein ERGIC-53-like OS=Homo sapiens GN=LMAN1L PE=2 SV=2 (Range: 460-526)  ali follow..  16  2.....................................LQPGIFLFYLLIQTVGFFGYVHFRQELNKSLQECLST............. 38
9 -4.410sp|Q9UJX5|APC4_HUMAN Anaphase-promoting complex subunit 4 OS=Homo sapiens GN=ANAPC4 PE=1 SV=2 (Range: 432-746)  ali follow..  210............................................................AQFYDDETVTVVLKDTVGREGRDRLLV 236
10 -4.390sp|O94880|PHF14_HUMAN PHD finger protein 14 OS=Homo sapiens GN=PHF14 PE=1 SV=2 (Range: 553-633)  ali follow..  13  15.RPLTSSASAIRKLMRKAELMGISTDIFPV......................................................... 43

FFAS is supported by the NIH grant R01-GM087218-01
1 1 4 9 9 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.