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anford Burnham Prebys Medical Discovery Institute
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Query: gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKAFLGALEFQENEYEELKELYESLKTKQKPHTLFISCVDSRVVPNLITGTKPGELYVICNMGNVNPPKTSYKESLSTIASIEYAIAHVGVQNLIICGHSDCGACGSVHLIHDETTKAKTPYIANWIQFLEPVKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQEKASKNELKIFGWHYIIETGRIYNYNFESHFFEPIGETIKQRKSHENFLast
1 -6.300sp|Q5HYC2|K2026_HUMAN Uncharacterized protein KIAA2026 OS=Homo sapiens GN=KIAA2026 PE=2 SV=2 (Range: 1809-1944)  ali follow..  25  62....................................PCIQQKIVINTSTPLAPGTQIMINGTRFIVPPQGLGAGSH................................................................................................................................................. 101
2 -5.320sp|Q96KD3|F71F1_HUMAN Protein FAM71F1 OS=Homo sapiens GN=FAM71F1 PE=2 SV=1 (Range: 1-137)  ali follow..  10  58...................LLCRVVHSPEFNLFLDSVVFES----NFIQVKRGRNWRDVYKASNTM------------ALGVTSSVPCLPLPNILLMAS.......................................................................................................................... 121
3 -5.050sp|Q9UKA2|FBXL4_HUMAN F-box/LRR-repeat protein 4 OS=Homo sapiens GN=FBXL4 PE=1 SV=2 (Range: 53-233)  ali follow..  10  1.QYAKEVVDFSSHYGSENSMSYTMWNLAGVPNVF--SSGDF---TQTAVFRTYGTWWDQCPSASLPFKRTPPNFQSQDYVELTFE-QQVYPTAVHVLETYHPGAVIRILACSANPYSPNPPAEVRWEILWSERPTKVNASQARQFKPCIKQINFPTNLIRLEVNSSL----LEYYTELDAVVLHG.................................... 175
4 -4.920tr|C9JDW2|C9JDW2_HUMAN Uncharacterized protein OS=Homo sapiens GN=LTBP1 PE=4 SV=1 (Range: 160-219)  ali follow..  25  8............................................PVVIEKTSP-------VPVEVAPEASTSSASQVIAPTQVTEINECTVNP--ICGAGHC....................................................................................................................... 58
5 -4.880sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=1 (Range: 894-1100)  ali follow..  16  1................................................FEVGAPVYFVTTLGYNFSSEAGMNA----------------------ICSSAGCNNFSFTQKIQYATEFPEQSYLASWVD............................................................................................. 62
6 -4.860sp|A6NKB5|PCX2_HUMAN Pecanex-like protein 2 OS=Homo sapiens GN=PCNXL2 PE=1 SV=3 (Range: 315-399)  ali follow..  18  33...................................VDSSDSEVAVTLIDTSQPGDPLSLHEPIKIVITMSSTPN---SMTDLESSL....................................................................................................................................... 80
7 -4.490sp|Q8N8K9|K1958_HUMAN Uncharacterized protein KIAA1958 OS=Homo sapiens GN=KIAA1958 PE=1 SV=1 (Range: 1-86)  ali follow..  16  12..........................................................................................LSKLVSWAHSHCSLIPNLKHLLSEGSHGNLTAM--W............................................................................................... 48
8 -4.490sp|Q8N5Q1|F71E2_HUMAN Protein FAM71E2 OS=Homo sapiens GN=FAM71E2 PE=5 SV=3 (Range: 1-93)  ali follow..  13  25...................ELQKTLQKGEYLPLRPLPMFES----NFVQVTHQGGPVFVNHRTNRL------------AMGVAASLPGLVLPDILLIGQPAED...................................................................................................................... 92
9 -4.460sp|Q8IYT1|FA71A_HUMAN Protein FAM71A OS=Homo sapiens GN=FAM71A PE=2 SV=2 (Range: 1-90)  ali follow..  15  27...................KLQRQLYKGEYDIFKYAPIFES----DFIQITKRGEVIDVHNRVRMV------------TMGIARTSPILPLPDVMLLAR.......................................................................................................................... 90
10 -4.440sp|Q8IX21|F178A_HUMAN Protein FAM178A OS=Homo sapiens GN=FAM178A PE=1 SV=2 (Range: 727-883)  ali follow..  15  4..........................................VTIDAIPDHHPGEIFNFLNSGKIFNQYTLDLRDSGFISAVEKLILKSGKTDQIFLTTQ--GFLTSAYHYVQCPVP-----VLKWLVQILSTLMEITIRNDTFSDSPVWPWIPSLSDVAAVFFNM....................................................... 136

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.