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anford Burnham Prebys Medical Discovery Institute
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Query: gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLEKINEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKLTQKPLNLast
1 -6.400tr|E5RI81|E5RI81_HUMAN Uncharacterized protein OS=Homo sapiens PE=4 SV=1 (Range: 52-131)  ali follow..  22  19......................................................KEIFPVMKEIEEDTQKWKIGRINIVKISILPRAIY--RFNVIPIKISMTFFTERGKK........................... 79
2 -5.850sp|Q400G9|AMZ1_HUMAN Archaemetzincin-1 OS=Homo sapiens GN=AMZ1 PE=1 SV=1 (Range: 406-474)  ali follow..  12  1......................................................EHERWLAMCIQALQREVAEEDLVQVDRAVDALDRWEMFTGQLPAT---RDSVGLRKVLGDKFSS.................... 68
3 -5.790sp|A4D997|CI102_HUMAN Uncharacterized protein C9orf102 OS=Homo sapiens GN=C9orf102 PE=1 SV=3 (Range: 175-256)  ali follow..  11  6...........................................................................VNQKKKKVYHTNQTTFIIGETPKGIRRKQFEEMASYFNSSSVNEFAKHITNATSEERQK.... 64
4 -5.650sp|Q5T2S8|ARMC4_HUMAN Armadillo repeat-containing protein 4 OS=Homo sapiens GN=ARMC4 PE=2 SV=1 (Range: 90-238)  ali follow..  20  86...........................................................................LKQLDLHLLNHSLKHISLEISLSPMTVKKDIELLKRFSGKGNQTVLESI.............. 134
5 -5.640sp|P78527|PRKDC_HUMAN DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=1 SV=3 (Range: 2501-2606)  ali follow..  10  6................................................LIQGLIDENPGLQLIIRNFWSHETRLPSNTLDRLLALNSLYSPKIEVHFLSLATNFLLEMTSMSPDYPNPMFEHPLSECEFQEYT..... 90
6 -5.420tr|F8W8V9|F8W8V9_HUMAN Uncharacterized protein OS=Homo sapiens GN=KIF1A PE=3 SV=1 (Range: 689-813)  ali follow..  12  26.............................................................ELALWAFRKWKWYQFTSLRDLLWGNA------------IFLKEANAISVELKKKVQFQFV................. 73
7 -5.370sp|P51587|BRCA2_HUMAN Breast cancer type 2 susceptibility protein OS=Homo sapiens GN=BRCA2 PE=1 SV=2 (Range: 2197-2258)  ali follow..  16  19............................................................................................YSKDSENYFETEAVEIAKAFMEDDE..................... 43
8 -4.890sp|Q9H0H0|INT2_HUMAN Integrator complex subunit 2 OS=Homo sapiens GN=INTS2 PE=1 SV=2 (Range: 926-1150)  ali follow..  12  62LCNLREVQCLICCLLHQMYIADPNIAKLVH------------QGYPCELLPLTVAGIPSMHICLD------ELIAQPELEKQIFAIQLLSHLCIQYAARLAVNVMGTLLTVLTQAKRYAFFMPTLPSLVS........ 184
9 -4.840sp|Q9BZH6|WDR11_HUMAN WD repeat-containing protein 11 OS=Homo sapiens GN=WDR11 PE=1 SV=1 (Range: 844-933)  ali follow..  18  28.......................................................DISHVDYPENEEIKNLLQEQLNSLSNDIKKL--------LDPEFTLLQRCLLVSRLYGDESELHF.................. 85
10 -4.830sp|A4FU69|EFCB5_HUMAN EF-hand calcium-binding domain-containing protein 5 OS=Homo sapiens GN=EFCAB5 PE=1 SV=2 (Range: 287-465)  ali follow..  1.............................................................QALQEQFDEWILDPKGMIPKSVIQNVLQEFFQNPDFKLGSHCKQLDTEPRLNKMEFTEYISSHIKDLKSEM...... 75

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.