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Query: gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in JCSG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAKEIKFSDSARNLLFEGVRQLHDAVKVTMGPRGRNVLIQKSYGAPSITKDGVSVAKEIELSCPVANMGAQLVKEVASKTADAAGDGTTTATVLAYSIFKEGLRNITAGANPIEVKRGMDKAAEAIINELKKASKKVGGKEEITQVATISANSDHNIGKLIADAMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRAAQKVHLNLHDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEVEKHEGHFGFNASNGKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKAAPAMPDMGGMGGMGGMGGMMLast
1 -154.000TM0506 TM0506 282379 Purified-2001-12-06  ali follow..  59  1MPKILKFNEEARRALERGVDKVANAVKVTLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVEKAVEEIKKVSKKLSGREDIAHVAAISAN-SAEIGELIAEAMDKVGEDGVITVEDSKTLETYVEFTEGMQFDRGYISPYFVTDAEKMEVVLKEPFILITDRKLSAVKPLIPILEKVAQTGKPLLVIAEDVEGEVLTTLVLNKLKGTLQSCAVKAPGFGERRKAMLQDIAILTGGQVASEELGINLEDLTLEDLGRADLVRVKKDETIIIGGKGDPEAIKKRIAQIKAQIEETTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKELEGDEKIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDAYGFDALRGEYCNMFERGIIDPAKVTRSALQNAASIAGMLLTTEVLIVEKPEEKKETPSMPEE............ 537
2 -6.350SP18233A YP_001304000.1 412665 Selected-2009-11-12  ali follow..  11  655.......ASSGSEIDLGATNVARGSVRVTAG-ENVDYTVDYSLGRVTILNESI-ISSGTPVSVSLENFNMQRKTMIGLDLNYQFNKDFMVGATVMHMSEMPLTVKTTLGDESIK---GLNTSYKAESQWLTNVFDKLP---TLTKPSQISFNAE--FAHLIAGHYENQYTGGYSYLDDFESTQSGMDLLNPYAWNLA--TPYEDSNPKFPEAEKVNDIAYGKNRALLAWYTVDGIFTRKSSSSRPRHLTNDDLSNHYTRGVSYKEI-------------FPNKELGTNDNTTLPV--AFYPNERG--------------------NLDAENVNSDGTLGNPEKRWGGVMRKIEPSDLESANYEYIE--ETAEGGDLYFNLGEISEDILKDERKFFENGMPVDGDMSKVDTTVWGKVPRTQSTYAFDAQNRELQDVGLNGLSTEEEQTFAKLSGETISKMMDDPFSPFNDPAGDNYHYFRGDDYDAKELDILSRYKRYNGTEGNSQESDQRYATAGKSTPDVED....................... 1163
3 -6.330SP17883D ZP_02996098.1 410375 Selected-2009-11-12  ali follow..  14  965.....GYDGKAEEDINGFGSPLVIG-KTASIPKVMKATEEKIPKAPSVTKQYVKAGDDIKISGVTKEDEIYLAPEGGSYAKDITNKPYKSHDNLFFEDQSKSKDERETEYEKSG-RPSIEEGYQCKLVDGKIPQGVRSGKYKVYMVNPIGSSSPSS-GEVIVD-----NEDPVVRLDIAKKTPVMGKDKDGTDIIVGQKFTVTFAAFDNSFDNSIKEGITVSLARLDSPKSAMKTQEIKDKGSKTFEV-AGNIGQINLKEQASATNTSTISLAIRTDQEGVDLVKSRLRDLTKVSD-EITVGTVKYALQEDSLRSLGVSPFID-SNANKPKENGSQLSSKVS--IYKVNDVVYIEGNDKELIKINDTDTAIVSNMIGLNPDEGNTGVDSEKQ---QYVITVTGEAKNKGKL---IICLAGKCFNIDIVANEGAESIATKIATAINRILDGYESATATGNTIKVIRNYGGAVIPTFTVESFNYDN.............................................................. 1474
4 -6.150TM0272 TM0272 282149 Selected-2001-10-12  ali follow..  15  199......FPQDPWKQLWLAIDAVFGS-------NERAIKYRQIHGIKEGDLLGTAVNIVAMV---FGNMGEDSGTGVAFTRDPNTGEKKPYGEFLPNAQGEDVVAGIRTPLKLEELKNRMPEVYNQLLEIMDKLEKHYRDMQDIEKLYILQTRNGKRTSQAAIRIAVDMVHEGLITKEEA------ILRVRPEDVEQ-VLHPVFDPKEKAQAKVIAKGLPASPGAATGKVVFNAKKAEELGKAGEQVILVPEDVGGMAAAQGILTSRGGMTSHAAVVARGMGKPAVVGAESIEVHPEEGYFKVGDVVVKEGEWISIDGTTGEVLLGKVTTIKPQGEGPVAELLQWADEIRRLGVRTNADIPRD------AEVARKFGAEGIGLCRTEHMFFEKDRI--------PKVRRMILAKTKEEREKALDELLPLQKEDVMKGLPVTIRLIDPPLHEFLPQEDEQIKEVAEQM................................................................................ 647
5 -6.000SP18602A ZP_03311518.1 410639 Purified-2010-09-20  ali follow..  10  15..................................................................................................................................................................................................................................................................................................ATAMLGACVGQSSSSAANESMYLEQRVQEHDTLLRQMQPAQAEVWNQVQAMRQELNTLKGLVDDLKNVGGAAALAERVRAHDAALRQVETSMALNLNLGEPMAAGGAAPAHAAAP............................................................................................................................................. 129
6 -5.540SP16959A ZP_02068802.1 409262 Selected-2009-11-12  ali follow..  13  127AAEEARYYMQTTGNKRHALVMRAPNADLARDPRGR---TEESFGEAFLTAQTIASVRGLQGNHPRYWKTASLMKHFLANSNEDGRDSTSSDF-FYKGITEGGSRAFMAAYNSWN--NGIICTDGGALKLLIEAHKSFPSFAEGAAAV-VKATTGQFLDAYVPYVKEAL-EKGLLTEVD---IDKAIRGNIFVALKLGLLNPYLSIGKNST------------ETPPFMTAEARRLAREVTAKSVVLL------KNKKLLPLDAGKLRKIAVIGPYSDKIVQDWYSGTPPYETTILSG--IRNAVKEGTEIIHAEDNRMGQAEKAAAAADVAIVCVGNHPYGTRADWKFSPVPSDGREAVDRKSLDEDLVKLANPNTILVLVSSFPYTINWSQEHVPAIVHITHCSQE------QGNGLADV---LFGKVNPAGRTVQTWVKDITDLPDIMDYDIRNGRTYMYHQGPVLYPFGYGLSYSDFTYEKI-KKNIRVTVSVKNTSGRDGEEVVQLYASYPDSKVERPSKQ..................... 663
7 -5.490SP18233B ZP_02033079.1 413021 Selected-2009-11-12  ali follow..  12  657.......ASSGAEIQLGASNVARGSVKVTAG-ENVDYTVDYTSGVVTILNESI-ISAGTPVSVSLENYNMQRKTMMGLDLNYQFNPNLMVGATIMHMSEMPLTTKTTMGDEAIK---GVNMAYKGESQWLTNMFDKLP---NLSKPSQISFNAE--FAHLIAGHYENKNTGGYSYLDDFESTQSNFDLSDPYPWQLSSVPYDDGTPQLFPEAGLTNNIDYGKSRALLAWYTIDGLFTRKNSSLRPKYITTKDLSNHYVRAIETREL-------------FPQRQQSMSESNTLTV--AYYPQERG--------------------NLDADNINPDGTLQNPEKRFGGMMRKIDQSDFETANVEYIE--RQTTGGDLYFNLGEISEDILKDEKKFFENGLPIDGDTSKVDYTVWGKVPKQQSTVDNTAGARLLQDVGLNGLSSDEEKEYPA-VTLTEMENDPLQLSPFFDPAGDKFHYFRGSDYDSQEVDILTRYKRYNGTEGNSKDINDSGERYSTSSKTVPDVED.................... 1173
8 -5.430CH2131A P50570 400608 Selected-2009-01-06  ali follow..  13  1......MGNRGMEELIPLVNKLQDAFSAVVGGQGKSSVLENFVGRDFLPRGSGIVTRRLQLIFSKTEHADEVRQEIEAETDRVTGTNK-SPHVLNLTLIDPGITKVPVGDQPPDIEYQIKDMISSLILAVTPANMDLANSDALKLAKEVDPQGLRTIGVITTDARDRRGYIGVVN-RSQKDIEGKKDIRAALAAERKFFLSHPAYRHMADRMGTPHLQKTLNQQLTNHIRESLPALRSKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLSGGARIN--IFHERFPFELVKMEFDEKDLRREISYAIKNIHGVRTGL------VKKQVVKLKEPCLKDLVIQELINTVRQCTLSSYPRLREETERIVTTYIREREGRTKDQILLLI........................................................................................................................................ 479
9 -5.330SP18482A YP_001337187.1 411660 Purified-2010-09-29  ali follow..  10  20................................................................................................................................................................................................................................................................................................................................................AASPCQEKEQDIQREISYAEKHHNQSRLNTALRQVRENCSDSKLKADHQQKIAKQREEIAERQRDLQEARKKG......................................................................................................................................... 95
10 -5.170SP16762A ZP_02070866.1 409223 Selected-2009-11-12  ali follow..  12  1MKSFQFKSLLLLAALIISLPSFGQGLKAFKLKNGLSVYIWEDESKSDVF---GLVGVRASINDPEEYTGAHYLEHVMFKGTDKIGALNWTEEEPIYKEIIAKYDQMAEEADPAK-KEAISKEINELTVKAGKLGLPNEYSNLMESMGAKGVNAGTYYDWTF-SSFPAYQINKWLEISSQRSFQSELENVYE-EYNRSQDDQGRAQNQFVMEKAFEHPY--PEHLKNPRLSKLIEFYEQWYVPENMVLVLVGNIKAQQISGRI-NAAFGRLA-KVYQNLEIKGRKQYSAKVMVFNGVPAGHPDEDALDIALALLNN-NSQTGTKLVLDGELTSAGAYTRTFREQGRAIVAAIPLYDENQRRFESTKSAEKKALKAIQQIANGEFEDWKIDAIKAEK-------CRQFDLEMESNEDKAMILMNAFYNEQDLGDILNYKDKIMAITTDDIKRVAKKYLSDNYLALYIEKIGKESLYATQFKNLPIGQMEEKFADYGEVQIKQLNDRSKM....................................... 544

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.