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Query: gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVKNTGELKKLSDTYENLSNLLTNFNNLNQAVTNASSPSEINATIDNLKANTQGLIGEKTNSPAYQAVYLALNAAVGLWNVIAYNVQCGPGKSGDQSVIFDGQPGHDSRSINCNLTGYNNGVSGPLSIDNFKTLNQAYQTIQQALKQDSGFPVLDSKGKQVTIKITTQTNGANKSETTTTTTTTNDAQTLLQEASKMISVLTTNCPWVNTAHNSNGGAPWNLNTTGNVCQVFATEFSAVTSMIKNAQEIVTQAQSLNNPQSNQNAPKDFNPYTSADRAFAQNMLNHAQAQAKMLELADQMKKDLNTIPKQFITNYLAACRNGGGTLPDAGVTSNTWGAGCAYVEETITALNNSLAHFGTQADQIKQSELLARTILDFRGSLKDLNNTYNSITTTASNTPNSPFLKNLISQSTNPNNPGGLQAVYQVNQSAYSQLLSATQELGHNPFRRVGLISSQTNNGAMNGIGVQIGYKQFFGEKRRWGLRYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVLYNFINDKATKNNKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAKMNVANFQFLFNLGLRMNLAKNKKKASDHVAQHGVELGVKIPTINTNYYSLLGTQLQYRRLYSVYLNYVFAYLast
1 -4.440HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  12  15..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AFLAGAGVSAGVFAFV-----IGVRIENIILIE-------------NVMICGVVAGNISSVLDTA-----IAIYGLCVGIFVG-AVALAEILHTFPIIYKRMKLRAGLGIIVISMAIG.......................................................... 141
2 -4.320PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;  ali follow..  11  1.........................................................................................................................................................................................................................................................................................................................................................................................................................................MSNIEQAYRGYGFAGRGQKNGCTVYQLKGEGGSGEMVCYDIAPGIQMSFNVKKFLQIDY-GCYEVEYQN----------TVSFLGEG-DLCVTDLSRQVFVSSRLPLRKYRGVTL---------------FLEVEKAQHTLSAGFPQAEINLAGIVNELCGKEQSLLVKSREDV-----IFGKLSEVDERIQAPYYWIKTMEL...... 190
3 -4.220PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;  ali follow..  14  19....................................................................................................................................................................................................................................................................................................................................................................................................................................................SFGGNGNGNGTDSLQATRYVTRATMYGVGYTNVFDTYLSPQEYKGIEFQNFFQANLAYTHNRVDNNNTFAGLVNWNYGLHYQFRITDN----KLLAGGMGDFN-GGFVYNLRNTN-------------NPASARAYINLDWHTKIKNYPL---------ALRYQVNLPVI............................ 187
4 -3.590HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;  ali follow..  1......................................................................................................................................................................................................................................................................................................................................................................................................................................................................NQDSWQKWNAEYEFRYQLMHGL-----ISLRAALGMDYCDSRAADYHHTHCNLYAVVNAQAAYCMLYGETLALGEDLHDIALTLTLAMNNPFMDNYRIGCENWNRRAGNTSYQYVNLLVKVTYGMDFGRKRKTAAKRIQNEDTDTGI................................. 167
5 -3.580PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  14  199................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SIFLSFISIFALT---------TFAYNSTFLNLAQ---RINTIR-NPNPNEIFNFLNNLPIEN---------GLLTVEAIWFLQSKMELTDTATVI---INNTAY-----VNINKNSVKHNNFAVNYLKSEDVEVSPKIPALTKNIFSSVGISSLSTNNPKLIFTFTFGF 380
6 -3.560PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;  ali follow..  19  17..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGNPLEFK---------GLKSQYLFIFAGGLVAV------VVVILYIAGVNQWI------------IPFGLLSGSLLVWLTFRLNARYGEHGLMKLLSGKRHPRYL................................................................. 99
7 -3.240PB008806 Q5L9W8_BACFN/1-127 PB008806; Pfam-B_8806;  ali follow..  13...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FISYGNLQTATMIIGTP-------------LSIAESYVHKNMGEILQQTMSITQIRIKPNKLFLNIN--FKEQLNKLNQSVRMKQRQKIVR-SILLDFSKKVKFNAA-----LNLAFCIF....... 127
8 -3.190HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  17  14.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GVGNAASPVGAYASSTEWFG----YGLS-YTTFTQEIQGQPEISVNIDSETGAPQAYATFNVKVTNT----------GKVPGKTS--QIYGQAPYT---------EGGLEKVAIQLL-------NFEKSSE---APGASEIVSVKVDLQYIAS-YDMEHDNGDGTTGTYVL--TYYFAA 167
9 -3.060PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;  ali follow..  10  7..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LTAFRAYWTKYVEARYEGELNPDAELGKTDPKAAQELYRSVSYGNGLDCY--------------KVGPTLGG---GTTALMAGDTIVYPYCYATQEILDNGPLRFTVKLVYN-PLVVKGDSTIIETRIITLDAGSYCNKTVVSYTNLKE................... 168
10 -3.020PB001232 gi|126647001|ref|ZP_01719511.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]gi|126577049|gb|EAZ81297.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]  ali follow..  11  464...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................LNASIEWVKYGGRKYPITSNSPLILSYNKA-----------------SNSESSADFDQIEVGIEHYFEFGVSAGTFLSNKNVYFQDYQHFGGNRTIFSNFGPASNYRFM----YKYSTNTSYVSGIFHYQFRKFLLT-QLPMLRFSGVRENFFNYLKTENSKNYWEVGYSL 634

FFAS is supported by the NIH grant R01-GM087218-01
1 1 4 9 9 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.