current user: public

anford Burnham Prebys Medical Discovery Institute
We are hiring bioinformatics experts and software developers. Join us!

Query: gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650    .  660    .  670    .  680    .  690    .  700    .  710    .  720    .  730    .  740    .  750    .  760    .  770    .  780    .
# Score Template Links and tools%idFirst MLEKLLSAIKQKVSNYFLGVLPKSYSMSEENNILGLYDEHFLLTKNENLVGILRLEGVSYTHLSTEQLQDLFTERQMALDSLEKVVARLVVKRRKIDHQQNIQSDSQYLQAILNQFENKEVYENQYFLVLESTHSLHGVLEHKKKSLMHANRENFKDILSYKAHFLQETLKSLEIQLKNYAPKLLSSKEVLNFYAEYINGFDLPLKPLVGGYLSDSYIASSITFEKDYFIQESFNQKTYNRLIGIKAYESERITSIAIGALLYQETPLDIIFSIEPMSVHKTLSFLKERAKFSMSNLVKNELLEYQELVKTKRLSMQKFALNILIKAPSLENLDAQTSLVLGLLFKENLVGVIETFGLKGGYFSFFPERIHLNHRLRFLTSKALACLMVFERQNLGFKANSWGNSPLSVFKNLDYSPFLFNFHNQEVSHKNAKEIARVNGHTLIIGATGSGKSTLISFLMMSALKYQNMRLLAFDRMQGLYSFTKFFKGHYHDGQSFSINPFCLEPNLQNLEFLQSFFLSMFDLAPSRDKEALEDMNAISSAIKSLYETLYPKAFSLLDFKETLKRTSSNQLGLSLEPYLNNPLFNALNDAFNSNAFLNVINLDTITQNPKDLGLLAYYLFYKILEESRKNDSGFLVFLDEFKSYVENDLLNTKINALITQARKANGVVVLALQDIYQLSGVKNAHSFLSNMGTLILYPQKNARELKHNFNVPLSETEISFLENTPLYARQVLVKNLGNGSSNMIDVSLESLGRYLKIFNSDSSHVSKVKALQKDYPTEWREKLLRSLast
1 -9.020HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;  ali follow..  10  2..........SREKRKAKKEAEKRLSTRQFIGAKE-ITDYSLVTYGQGELVYFIVKPTNISVLSESSVGARIYALMTVLKGVAEIEMLCLNSRESFEDNKREQEENPVIRRLLDRIQVQMATAREFLIMLRLK--------------------------DEKESDIFPYLSRIEKSLKEFSVKRADKEDIKRILAVYYEQN.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 180
2 -2.680PB012771 _Gut.Meta.Jp.0094636_ gi|162817068|dbj|BABA01027641.1||1 (+ 249:636~0 complete)  ali follow..  26.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YYFPTCMLGDKSPNGKWA--SLYERYLQEKHPHEYVRLIWA-DELAALLESVQRECEEREAVLVREMAEAEGVNEEMKGNEQMAWVQRM... 111
3 -2.390PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  164...................................................................................................................................................................................................................................................................................................................................................................................................................................................................PHLDFKEIETIYKYRVEIEFLQ--KIKARQLAKEVMYPVTQYTNGSFRKTVDM--RTINSKWLKENKPFFKNSDRGFMEFELARRIQKRRGKVVSGIEKYLDYRAINKIPEGVGIVR-IKNKVDFSYY---------LDYLNLMRDL-NIA----IDSENIIMPKNLVIAHDNAVKL----------LYQMKHEVEEQQYKVRFEKIKDLEKTIDNYAFIVPKQASDLLTEG---KALSHC----------VGGSNYIKQHIEGKTTI------------IFVRDKQDLEKSLYTLEYKN-----QIYQLRGKHNCDPTKDVQMAANKWAKLLKSK 446
4 -2.300PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;  ali follow..  15.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VLLYIFDRVQFPLANIQLTQFIMENDIMNYFM-------LQQFIGELKESSFIMEQEKDTGQLFMITDQGKKTLTYFISRIPEEKRLKIDHLLNIKKEEFVRNTEIKGEYEKDNEYLVKLSVIEQGTPIFNLKL---------SVGNVKQAKDMCEKWRSDAQELYGQIINL 172
5 -2.070PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  99.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EQEYENQLKDILETIIGVEDVSIVVN---------------VDATSLKIFEKNRKTQETSTNET---KQGGKRTVSEMSSDEEIVIIKNGDKETPVVVQTKKPDIRGVL-VVAQGVDNVQIKKTIIE............. 207
6 -1.900HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;  ali follow..  10  32....................................................................................................................................................................................................................................................................................................................................................AGTVLVVGVIAVLLAAALGVSGLIQA-----QAAAGRSRAAADLAALGGATALSSIVAPGDPCEAASRVARANGAEVTTCSVTGEDVVVEVSVEARVLGVSRPAVSSARAG................................................................................................................................................................................................................................................................................................................................................ 137
7 -1.380PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali follow..  27LIEFIGRKTKNRRSIIVQKLGKKE--LIRQLDIAEANHCLSFEQVSDEIIEYFNIQEGDFHTVESCKYNV--------IGKVYHRLIISIISEQDNLVDVLFEVFNSFISDEISDFNSSVYYSNPEYLKYSYLEG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 156
8 -1.340PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  6.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GEPGKGIVLKEYGKNIQKIVDWILTIDREQRTRYANTCVELMRQLNPGVRDTEEHTTKL--------------WDHLFIMSN---KLDVDTPYPMPDIAVLGRKPERVPYNHNKLKYK--------GKNINLLIEQAILKEDGAEKEDAIIYLGRLMKRL-----YSTWNKENVDDEVIVEHLSELSKNNLQIDIARVKQEKLFDTIGGATADSRIPSSPSSSGG......................................................... 204
9 -1.280PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  58..........................................................................................................................................................................................................................................................................................................................................................................ENDWPEFLQRIIKAGSSPIQHDIMLLG----------------ALTALGACMSRHVRCLYG---------GKYHHPSLQCFVVAPSASGKGILSYIRILQNIMDSDGTGLICEAEADTDTLRKAFDHDRLSYNRRT-TPSQVQTPTAEDGSYSRQLYYYMCGISKWISQFMDNEIDWEEIFTAMGLEWKEKLSVIKT-HGIHTLQLTDEQKEEIDTV-----FSDLFERSSVANGREMYSFVARLAVNLCRIMSEVAVLRALESPQPYDFKTS--IITRWDVSISQEDFHAVLSLAEPLYCHATHILSFLPNTEISHRPNADRDYLFQKLGDEF----TRTQLLEEAVAMGIKENTALTWLKRLTKHGKLISMDGKG................................................ 507
10 -1.270PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  10  19........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SPDLKTAMLGRIRADEPRKVWTPSDFVDLASRDAVDKTLQRLTKARRIDRGLYDQPGFNPNPPDPRSVIDAVGRRDQTRMLVDGMTA-----ANDLGLTDAKIVVHTDARRRAATITFRPTAASKLFWAGRPAMRVVQALHWLRDLLVRDGESEQIQRK............ 188

FFAS is supported by the NIH grant R01-GM087218-01
1 1 0 2 4 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.