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anford Burnham Prebys Medical Discovery Institute
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Query: gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLEKLLSAIKQKVSNYFLGVLPKSYSMSEENNILGLYDEHFLLTKNENLVGILRLEGVSYTHLSTEQLQDLFTERQMALDSLEKVVARLVVKRRKIDHQQNIQSDSQYLQAILNQFENKEVYENQYFLVLESTHSLHGVLEHKKKSLMHANRENFKDILSYKAHFLQETLKSLEIQLKNYAPKLLSSKEVLNFYAEYINGFDLPLKPLVGGYLSDSYIASSITFEKDYFIQESFNQKTYNRLIGIKAYESERITSIAIGALLYQETPLDIIFSIEPMSVHKTLSFLKERAKFSMSNLVKNELLEYQELVKTKRLSMQKFALNILIKAPSLENLDAQTSLVLGLLFKENLVGVIETFGLKGGYFSFFPERIHLNHRLRFLTSKALACLMVFERQNLGFKANSWGNSPLSVFKNLDYSPFLFNFHNQEVSHKNAKEIARVNGHTLIIGATGSGKSTLISFLMMSALKYQNMRLLAFDRMQGLYSFTKFFKGHYHDGQSFSINPFCLEPNLQNLEFLQSFFLSMFDLAPSRDKEALEDMNAISSAIKSLYETLYPKAFSLLDFKETLKRTSSNQLGLSLEPYLNNPLFNALNDAFNSNAFLNVINLDTITQNPKDLGLLAYYLFYKILEESRKNDSGFLVFLDEFKSYVENDLLNTKINALITQARKANGVVVLALQDIYQLSGVKNAHSFLSNMGTLILYPQKNARELKHNFNVPLSETEISFLENTPLYARQVLVKNLGNGSSNMIDVSLESLGRYLKIFNSDSSHVSKVKALQKDYPTEWREKLLRSLast
1 -9.240sp|Q9UNQ0|ABCG2_HUMAN ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3 (Range: 1-300)  ali follow..  15  74.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GLNAILGPTGGGKSSLLDVLAARKDPSGLSGDVLINGAPRPANFKCNSG--YVVQDDVVMGTLTVREN----------LQFSAALRLATTMTNHEKNERINRVIQEL-----------------LDKVADSKVGTQFIRGVSGG-----------ERKRTSIGMELITD-------------------------PSILFLDEPTTGL-DSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFH-GPAQEALGYFESAGYH........................................................................ 283
2 -8.780sp|Q9H221|ABCG8_HUMAN ATP-binding cassette sub-family G member 8 OS=Homo sapiens GN=ABCG8 PE=1 SV=1 (Range: 1-300)  ali follow..  13  98.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GQMLIIGSSGCGRASLLDVITGRGHGIKSGQIWINGQPSSPQLVRKCVA--HVRQHNQLLPNLTVRET----------LAFIAQMRLPRTFSQAQRDKRVEDVIAEL-----------------LRQCADTRVGNMYVRGLSGG-----------ERRRVSIGVQLLWN-------------------------PGILILDEPTSGL-DSFTAHNLVKTLSRLAKGNRLVLISLHQPRSDIFRLFDLVLLMTSGTPIYLGAAQ..................................................................................... 298
3 -8.520sp|P42694|HELZ_HUMAN Probable helicase with zinc finger domain OS=Homo sapiens GN=HELZ PE=1 SV=2 (Range: 451-750)  ali follow..  14  1..................................................................................................................................................................................................................................................LTKSNYQSR------LHDLLYIE-EIAQYKEISKFNLKVQLQILKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVPKQKLVQTQGTKEKVYEATIEEKTKEYIFLRLSRECCEELNLRPDCDTQVELQFQLNRLPLCEMHYALDRIKDNGVLFPDISMTPTIPWSP-RLNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQETRILICHSNSAADLYIKDYLHPYVEAGNPQARPLRVYFRNRWVKTVHPVVHQYCLISSA.................................................................................................................................................................................................................................................................... 300
4 -8.350sp|Q9NUQ8|ABCF3_HUMAN ATP-binding cassette sub-family F member 3 OS=Homo sapiens GN=ABCF3 PE=1 SV=2 (Range: 151-450)  ali follow..  13  58...........................................................................................................................................................................................................................................................................................................................................................................................................................................................LVGRNGLGKTTLLKMLA---------------------------TRSLRVPAHISLLHVEQEVAGDDTPALQSVL------ESDSVREDLLRRERELTAQIAAGRAEGSEAAELAEIYAKLEEIEADKAPARASVILAG---------LGFTPKMQQQPTREFSGGWRMRLALARALFAR----------PDLLLLDEPTNMLD-----RAILWLENYLQTWPSTILVVSHDRNFLNAIATDIIHLHSQRLDGYRGDFETFIKSKQERLLNQQREYEAQQQYRQHIQVFIDR.................................................... 293
5 -8.280sp|Q9H222|ABCG5_HUMAN ATP-binding cassette sub-family G member 5 OS=Homo sapiens GN=ABCG5 PE=1 SV=1 (Range: 1-300)  ali follow..  13  82.........................................................................................................................................................................................................................................................................................................................................................................................................................................................MCILGSSGSGKTTLLDAMSGRLGRAGTFLGEVYVNGRALRREQFQDCFSYVLQSDTLLSSLTVRETLHYTALLA------------RRGNPGSFQKKVEAVMAEL-----------------LSHVADRLIGNYSLGGISTG--------------------------------------RRVSIAAQLLQDPKVMLFDEPTTGL-DCMTANQIVVLLVELARRNRIVVLTIHQPRSELFQLFDKIAILSFGELIFC-GTPAEMLDFFNDCGYP........................................................................ 290
6 -8.250sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2 (Range: 301-600)  ali follow..  13  34...........................................................................................................................................................................................................................................................................................................................................................................................................................................................LVGPNGKGKTTLLKHIA---------------------------NRALSIPPNIDVLLCEQEVVADETPAVQAVL--------RADTKRLKLLEEERRLQGQLEQGDDTAAERLEKVYEELRATGAAAAEAKARRILAG---------LGFDPEMQNRPTQKFSGGWRMRVSLARALFME----------PTLLMLDEPTNHLD-----NAVIWLNNYLQGWRKTLLIVSHD----------QGFLDDVCTDIIHLDAQRLHY------NYMTFKKMYQQKQKELLKQYEKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQE......... 297
7 -8.150sp|Q9BYK8|PR285_HUMAN Peroxisomal proliferator-activated receptor A-interacting complex 285 kDa protein OS=Homo sapiens GN=PRIC285 PE=1 SV=6 (Range: 451-750)  ali follow..  90.........................................................................................................................................................................................................................................................................................................................................................................................................................................................LLIYGPFGTGKTYTLAMASLEVIRRPETKVLICHTNSAADIYIREYFHSHVSGGHPEATPLRVMYTDRPLSQTDPVTLQYCCLTDDRQAFRPPTRAELARHRVVVTTTSQARELRVPVLIDEAAQMLECEALTPLAYASHGTRLVLAGDHM---------QVTPRLFSVARARAAEHTLLHRLFLCYQQE---------------THEVARQSRLVFHENYRCTDAIV...................................................................................................................... 300
8 -8.140sp|P42694|HELZ_HUMAN Probable helicase with zinc finger domain OS=Homo sapiens GN=HELZ PE=1 SV=2 (Range: 601-900)  ali follow..  11  42...................................................................................................................................................................................................................................................................................................................................................................................................................................LNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQETRILICHSNSAADLYIKDYLHPYVEAGNPQARPLRVYFRNRWVKTVHPVVHQYCLISSAHSTFQMPQKEDILKHRVVVVTLNTSQ---------------------------------------------------------------------YLCQLDLEPGFFTHILLDEAAQAMECETIMP-----LALATQNTRIVLAG-MQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYT--SELFYEGKLMASGKQPAHKDFYPL................................... 300
9 -8.040sp|Q9NU22|MDN1_HUMAN Midasin OS=Homo sapiens GN=MDN1 PE=1 SV=2 (Range: 151-450)  ali follow..  15  175.........................................................................................................................................................................................................................................................................................................................................................................................................................................................VLLEGPIGCGKTSLVEYLAAVTGRTKPPQLLKVQLGDQTDS-KMLLGM------------YRCTDVPGEFVWQPG---TLTQAATMGHWILLEDIDYAPLDVSVLIPLLENGELLIPGRGDCLKVAPGFQFFATRRLLSCG............................................................................................................................................................................................................. 300
10 -7.850sp|Q9H172|ABCG4_HUMAN ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=2 SV=2 (Range: 1-300)  ali follow..  13  98.........................................................................................................................................................................................................................................................................................................................................................................................................................................................IGIMGPSGAGKSTFMNILAGYRESGMKGQILVNGRPRELRTFRKMSC--YIMQDDMLLPHLTVLEAMMVSANLK-------------SEKQEVKKELVTEILTAL---------GLMSCSHTRTALLSGGQRKRLA---------------------IALEL----------------------------NNPPVMFFDEPTSGL-DSASCFQVVSLMKSLAQGGRTIICTIHQPSAKL--EMFDKLYILSQGQCIFKGVVTNLIPYLKGLGLH........................................................................ 298

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.