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Query: gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVKNTGELKKLSDTYENLSNLLTNFNNLNQAVTNASSPSEINATIDNLKANTQGLIGEKTNSPAYQAVYLALNAAVGLWNVIAYNVQCGPGKSGDQSVIFDGQPGHDSRSINCNLTGYNNGVSGPLSIDNFKTLNQAYQTIQQALKQDSGFPVLDSKGKQVTIKITTQTNGANKSETTTTTTTTNDAQTLLQEASKMISVLTTNCPWVNTAHNSNGGAPWNLNTTGNVCQVFATEFSAVTSMIKNAQEIVTQAQSLNNPQSNQNAPKDFNPYTSADRAFAQNMLNHAQAQAKMLELADQMKKDLNTIPKQFITNYLAACRNGGGTLPDAGVTSNTWGAGCAYVEETITALNNSLAHFGTQADQIKQSELLARTILDFRGSLKDLNNTYNSITTTASNTPNSPFLKNLISQSTNPNNPGGLQAVYQVNQSAYSQLLSATQELGHNPFRRVGLISSQTNNGAMNGIGVQIGYKQFFGEKRRWGLRYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVLYNFINDKATKNNKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAKMNVANFQFLFNLGLRMNLAKNKKKASDHVAQHGVELGVKIPTINTNYYSLLGTQLQYRRLYSVYLNYVFAYLast
1 -9.630[M] COG3637 Opacity protein and related surface antigens  ali follow..  13  87....................................................................................................................................................................................................................................................................................................................................................................................................................................................................YGKLKGGFSLGGGV--GYK--IND----RLRADVTADYWFKSNFNGGTSDLVSTSTEVSKMSALLLLANAYVDIGTWHGITPYVGAGIGGAR--VKWDTVYDPNTAETNPGASNWRFAYALMAGASYCLTDK-----------ILDAGYRFSHIQGGRMFEWDASSA--NTHEVRGGLRYQF 254
2 -8.070[G] COG4409 Neuraminidase (sialidase)  ali follow..  401...TEAQLVELEN------------GELKLFMRNQTGKVMMSTSKDGGYTWVNTEKINELDHGYSQLSVIKYSKRINGKEYIVFS-GQSRSGQGGDNLRRDGKLFLGEVQESGEIKWDTTNLVREIVSQGKAAGQPNGYVYSSMAELGDGSIGLAYENTTDYTTIMYLPIEMQEFFWKAGKIFSDVRQKEPLVFTYDGTETLEKIGDGIAIKRGEGESQSGINVSEGLLVLDQQTKDGKNKAFTQLTLNNSGVAQVNSTQNIDRFVVNNGATGYLQFTVTDTHSPRLKINQDVTAHGQIVAVQVNLQKKLKPNDKGYYHAQGEELIAFKDNGQVKWRLVNDELKDGMYVYTLASVAKPSVLRTTSQPHSLYLTNKLITADGKAVSTVSPLKAPLTVNARPQVNPVLASYLTANLALNKMSEQLQQSFMHETRLLQEKDRSIFVKYLNGKQK--GSNLSFIDYGYDVMLGVWQSERGNHALYT--KTSYKVTPKAVDGETKAKSWGGSINNLIVDLSAGY-HAGHVKGYTFNIGADLGYRYVGLHYLYASLSDVNDQANKALLKYNNFN-ALKTNLGVDVNYR-QQKTRQLYVDDVAYKQG-----LADTLHLNTQFVAHLTPRFAFSVGF-YQF 1080
3 -7.810[S] COG5373 Predicted membrane protein  ali follow..  12  20......................................................................................................................................................................................................................................................................................................................................................GRRSAERLDREIESLKAEIARLAKEGMGEPGPDLATGRPSEAGVPSVAGTEATADGPWSRAREGAGTSHDESAAGRESGDGAIDGPVAPSAAAARAESLESRIGGR------------VGGLALALGYAGLLSPAVRFGLALGVAGEVDVPAIADRFRNAMIPGVLTAAGA-GIYDFIG------TGAAFVLLALVSLATVG-------------------LSLLHGQALAGLGL---------------------LALLTPLFVSS-----------EPRPWVLFGFL... 274
4 -7.360[D] COG5279 Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain  ali follow..  50LLRNKKCVILLEERLNSSTENGRQPSKIVESFEKSNKVVIPPVPSRYSDERPRPKKKLSSSMPNSPKKPVDSLTKARKAKSKEMVNEKNIYNTQSSRHHNNSAPNLPLASHSKPQVRNFEESMNNPLPPLPPLPDLDNMRKTDKRAPKKSYSANDLHMARSSREYNYYKDNQKFYDGFIPEKRYSLEEDSISSGLFSNSQYLNDSACSSENSFALMSDFSATSAGSFARHKYAQSFSDSLQRSQNANGCSTKINDSQEFGDSNASSRNGKMGDILRKIIIPKRNTNIYSSSVSSPKSPKAYPKLPDIQNLNLSATPDEARDWIAVKCHLNRARTLTKYDKHPRYMRALEENRDLILHPQDSIYNGLNTNEVKGNTKPGLVDVELAELNIEYIDKMTWKRCIRDGTMTLDSWAQTTFSARYSTVLEKLRGIYIFCTEMFALTDDNGTSDFSAEPQNLEKILYRKHCTPYELTWLFKK-NSLGITCEIVIGFLKTP-SAINWEFKYNHCWLRILVNKEWRFID----------------------ILGNVTNPIHEFVNNRKIKKAENSYFEMIYT---HIPPREFEQHIVPSIDQLSA---LYLPLVFPSFFK...................... 647
5 -7.240[NT] COG1871 Chemotaxis protein; stimulates methylation of MCP proteins  ali follow..  13  14...................................................................................................................................................................................................................................................................................................................................................................................................................................................................VVTPPHTIRTAGLGSCVGVVLYDDVKKVAGMAHIMLPD------SALGKKQEFNRAKYATALDLLLSKLEAIGAKRYSLKAKMAGGAQM-----------------------FSFASNNDMMRIGQR----------NVEAVKKKLR--LSIPILAEDVGGSNGRTIEF.............. 143
6 -7.130[ZUD] KOG2101 Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s)  ali follow..  26  1.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MNY-----------------TFSTNLDFLFNF-------------GFFWGSEI---------------------------NFEAS---NYKINQLKRS----------------KI-------FNKKKSKNKLENEFQ-FLNFQFFF 69
7 -7.080[R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)  ali follow..  611IVRKN--MCSLAETVYKTVQKLQGLLSKYAAGQELMQRQREEQLKYWLDVGMHKKQEDPKTLKSPQKPAPPADQASTSSASTSGSGSGSSSMQPPKRMPAHLKRGSAASSPGVQSKGTENGTNGSNSSSSNSKNVAKKSADQPLSTLANTRERRSEYGQKRNVSGSRLAATPASKRKLSSKDVEQAADAPEVLTHSDNAVDVGIIDDECGGFGAVGVMNGVASPVANNSEMDTEAEVEAEPTATKAITIHCQQPVTTPVAAAATANERLPGVAPHRRGPRRADRREEELVAS...................................................................................................................................................................................................................................................................................................................................................... 915
8 -6.910[S] COG4329 Predicted membrane protein  ali follow..  13  2................................................................................................................................................................................................................................................................................................................................................................................................................................................................DDTAKENAEFPAAAGILLGLGLGGFFD-----GIVLHQVLQWHHMLSSAGFPPDSLENLRLNTFFDGLFHMGT----------VFVVLGLIVLWRR--RRRPLLWSAKLIAGTFLIGFGGFNLI---GT-----NHQI-----LGLHHVNETVSRD.............................. 131
9 -6.890[R] KOG2295 C2H2 Zn-finger protein  ali follow..  219..QRGFLQRRTDVFMELLEN-----GTIGSVKVDSSQADALIRVLDTCVIKLEGGTDEDLKVLDEKPKDPVVYERKAEQMQSVKEVEKTINSPKEEMSEADPVSTQRKPVRPVNSDGENWDDDDAENSAPKKELAEDSKDSDSKPEDKQLNKKKTKKRKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVKDGQPRALHRTSSIFLRNLAPSITRSEIEAVMRDVNIKEICWGLNNQRLRDCEMGAIVNRDLSRRVRPANGITAHKQVVRSDIKLCAKIALNLDEAEGPKDDSNSARANESSENGSGSTYGFNSQNPVLQNITDYLIEEASAEEEELLGLTGENKDTEGEPIERDEQLISVLDRLVLY-----------LRYYNHCEYPHARGPPPVRVTNNDVQEYIKIYESKLQQFLTKTVPLSDEEIKNLGAKDA--EKFVQANTQELAK--PLSGKKFKGPEF-----------IRKH-------FNKHEEKV------------------DEVRKEVQYFNNYL... 853
10 -6.850[R] COG2940 Proteins containing SET domain  ali follow..  460IFNDIAHAQTCSNAESG-NLTIMSRSRRIPILIKFHLILPRFQNRTRFNKSSSSSNSTNVPIKYESKEEFIEATAKQILKDLEKTLHVDIKKRLIGPTVFDALDHANFPELLAKRELKEKEKRQQIASKIAEDELKRKEEAKRDFDLFGLYGGYAKSNKRNLKRHNSLALDHTSLKRKKLSNGIKPMAHLLNEETDSKETTPLNDEGITRVSKEHDEEDENMTSSSSEEEEEEAPDKKFKSESEPTTPESDHLHGIKPLVPDQNGSSDVLDASSMYKPTATEIPEPVYPPEEYDLKYSQTLSSMDLQNAIKDEEDMLILKQLLSTYTPTVTPETSAALEYKIWQSRRKVLEEEKASDWQIELNGTLFDSELQPGSSFKAEGFRKIADKLKINYLPHRRRVHQPLNTVNIHNERNEYTPELCQREESSNKEPSDSVPVSSSRDNRASNRRFQQDIEAQKAAIGTESELLSLNQLNKRKKPVMFR------HNWGLYALDSIAAKEMIIEY-VGAEMREKRYLKN-------------GI---GSSYL----------------------FRVVIDATKKGGIARF--------INHCCD-----PNCTAKIIKVGG-----RRRIVIYLTYDYKF 1056

FFAS is supported by the NIH grant R01-GM087218-01
8 2 8 4 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics. 2001 Mar;17(3):282-3.