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Query: gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MADSLAGIDQVTSLHKNNELQLLCFRLGKNKDLYAVNVFKIREVVKYHGNLTIISHENNSLVEGLIIIRELTIPLIDMKKWFYYDSQNKNKDLRPYRIEKEKGEDDIVMICEFSRWTIGVRIYEADRILSKKWTEMEQSAGLGGSAGNNKLVSRTRYFDGRLVQVVDIEKMLIDVFPWIEDEKHNDLETLSKIHSNQCVLLADDSPSVLKTMQMILDKLGVKHIDFINGKTLLEHLFNPTTDVSNIGLIITDLEMPEASGFEVIKQVKNNPLTSKIPIVVNSSMSGSSNEDMARSLKADDFISKSNPKDIQRVVKQFLELALast
1 -63.000[NT] COG0835 Chemotaxis signal transduction protein  ali follow..  24  1MSGVLNTVDQRTNLVGENRLELLLFSLN-SRQIFAINVFKVREVIKVP-LLTKMPG-SHPHITGVASLRGEPVPVIDLRSAIGFPPRR------------VQDTEQNLIITEYNRTIQGFLVGQVRNIINTAWTEIQPPPKSAGRANYTAFTHVKEQDKTHIVEIIDVEKVLAEIVHYDASISKEVLDESLLNHMDGR........................................................................................................................... 184
2 -23.800[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain  ali follow..  20  4.....................................................................................................................................................................................................HVLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALEL-----NDIDLVLLDINLPGEDGLLLTRELRSQ---SEIGIILVTGRTDSIDKIVGLEMGADDYVTKVDLRELQVRVKNLLWRI 120
3 -20.800[KT] COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain  ali follow..  26  39....................................................................................................................................................................SYSLSNSCHFNLKCLNFVMNRMFHMSMEDLSQCTILIVDDSPDNIAFMSQGLAQ-YYRIKAARSGKVALEILAQ-----YPIDLVLLDIVMPEMSGYEVINQIKHNPHTEHIPVIFLTGKSNPEDEQLGFELGAVDYVFKVSIPLLKSRVHTHLQ.. 188
4 -20.600[T] COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases  ali follow..  10..................................................................................................................................................................................................AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSAL---------PPAHYDMMLLGIAVTFREPLTMQHELAKAVSMTDFLMLALPC-HAQVNAEKLKQDGIGACLLKPTPTRLLPALTEFCHHK 128
5 -18.800[T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain  ali follow..  16  3.....................................................................................................................................................................................................NVLIVDDEQIEREGLKLFLDRPNIHIVEASNGRQAIEKALETQPD-----LMMMDIKMPGVDGVQAVKEIKQ--QLPETEFIMVSAFDTFEYAREVMRYGVKEYLLKPTKEDVLTALDRIVGE. 121
6 -18.000[TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain  ali follow..  13  1.....................................................................................................................................................................................MEDLKQEDTEAIGNDPTLLLVDDDKPFLQRLARAMESRGFQVTTAESVEEGIAAVKTSAPA-----YAVVDMRLGDGNGLNIIEAIRS--RRADTRAIVLTGYGNIATAVNAVKLGAIDYLSKPDADEVFAALTRRPGEK 134
7 -17.100[T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain  ali follow..  22  136.................................................................................................................................................................................................NKRFSVLVVDDARTARSGLVEILERQNFKVSEAHSGNRALEIL----SQDPSIQLVITDYHMPDMDGYELTRRIRDSRSSEDLRVIGISSSTDRLLSASFLKAGASDFVYRFVPEELQCRIDNNIETL 260
8 -15.500[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  ali follow..  22  3.....................................................................................................................................................................................................KILIADDHPLFREAIHNVIADGGSEVMETADLDSALGLT----QEHDDLDLILLDLNMPGMHGLNGLMNLRN--EAPTIPVVIVSAEQDKQVVLQAITYGAVGFITKSPRAQMTEAIEQILN.. 121
9 -14.900[T] COG4566 Response regulator  ali follow..  19  22..................................................................................................................................................................................................AESIVVVVDDDAAVREGLSELILSAGFQPVSFASTQELLNAV----DILDGPGCLILDVHMPGESGLDLQHHLAERG--IGKPIIFLTGRGDIPMTVQAMKDGAVDFLTKVSDRTLLDAVIAAIAL. 142
10 -14.800[KT] COG3279 Response regulator of the LytR/AlgR family  ali follow..  12  3.....................................................................................................................................................................................................RVIIVDDEQPAREDLRERLNEEH--VAECSNALEAIPAIQRLQPD-----VVFLDIQMPRINGLELASMLNPE----SMPHIVFVTAYDEYAIRAFEEHAFDYLLKPLDHQRLAKTLTRLSRD. 118
11 -14.300[T] COG3707 Response regulator with putative antiterminator output domain  ali follow..  13  13..................................................................................................................................................................................................RDLTILVIDENAIRASIIEEGLREAGYQRVVIHEVNGVARTIETLQPD-----VIFIDLENPNRDMMEHLFQLTRT---VGRPIAMFVDRSDTASIEAAVEAGVSAYVVDLKKERVKPILDMAVSR. 132
12 -13.300[T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains  ali follow..  21  4.................................................................................................................................................................................................RKPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEGLRVLHR-----EKVDLVISDLRMDEMDGMQLFTEIQKVQ--PGMPVIILTAHGSIPDAVAATQKGVFSFLTKIDRDALYKAIDEALEQS 125
13 -12.800[T] COG2198 FOG: HPt domain  ali follow..  13  2............................................................................................................................................................................................................SNEVRAIVLRQLENWGATCITPDERQIS-----------QEYDLFLTD-NPSNLTAS----------------GLLLSDDESGVRKIGPGQLRVNFNMSNAMQEAVLQLIEEQLAQE 90
14 -12.100[NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain  ali follow..  20  5.....................................................................................................................................................................................................RVLSVDDSALMRQIMTEIINS-DMEMVTAPDPLVARDLIKKFNPD-----VLTLDVEMPRMDGLDFLEKLM---RLRPMPVVMVSSLTGSEVTLRALELGAIDFVTKPQLGAYSEMIAEKVRTA 130
15 -12.100[KT] COG4565 Response regulator of citrate/malate metabolism  ali follow..  15  6.....................................................................................................................................................................................................DVLIVEDETSIADVHSFYLKQTRFRPVVAQSINEARNMVRILKPK-----LIFLDNYLPDGRGIEFLKELTHQP--QAPDVIFITAASDMETVREAVRCGVFDYLLKIAYDRVQNSLERYLKY. 124
16 -11.000[T] COG0784 FOG: CheY-like receiver  ali follow..  12  4..................................................................................................................................................................................................RRLRVLVVEDESMIAMLIEDTLCELGHEVATASRMQEALDIARK-----GQFDIAIIDVNLDGEPSYPVADILAE----RNVPFIFATGYGSKGLDTRYSNI---PLLTKFLDSELEAVLVQISKE. 119

FFAS is supported by the NIH grant R01-GM087218-01
8 3 0 7 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.