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Query: gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .
# Score Template Links and tools%idFirst MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKTKTKCYRALast
1 -16.400[U] COG3702 Type IV secretory pathway, VirB3 components  ali follow..  19..........VKGLTRAPTVLGIPYELAGFIGVLTAVVFLATHNLLMLCICVPLYAVARIAIMRDSMFIEIMFIRSRKTPPRSASF. 94
2 -6.220[S] COG5530 Predicted integral membrane protein  ali follow..  12  74...........RMAGWRDRL---RTTNWAITVVAAMLSVSLST--GVLLFAMLLILLLLWIEARRYRFFDFYRARVRQFERHYF... 147
3 -6.120[J] COG0199 Ribosomal protein S14  ali follow..  21  79.....LSRIKVREAAMRGEIPGLKKASW........................................................... 101
4 -6.090[O] KOG4716 Thioredoxin reductase  ali follow..  19  175.............ITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASMEER........ 240
5 -5.940[S] KOG4502 Predicted membrane protein  ali follow..  18  583VIIPFIPIEYLRNLLESTAFLAL---STVLSIPIIIILVYLEFVLFIEEIFTYVMGFFVILET----LLSLVLTITFSSSG...... 667
6 -5.820[S] COG2322 Predicted membrane protein  ali follow..  140LALTAVARAWNQEHERHRKIVRWTMPLWLYVSLTGVLVYLMISPYY......................................... 185
7 -5.380[NU] COG5268 Type IV secretory pathway, TrbD component  ali follow..  138......TVPVHRALTEQIMLGGAPRGIAILNGTLAGAVGLGLLWLIGLLIWAVGHATAVWAARRDPLFFEVGRRHLRLPG....... 212
8 -5.300[S] KOG3680 Uncharacterized conserved protein  ali follow..  15  618.....IDINRHKEIIVK------SLSAILLLLVKHFKLNHIYQFEYICQQIVYVNGIPLILKFLDQNTNKLIQSRHEIYAYNYPQCL 693
9 -5.140[K] KOG0015 Regulator of arginine metabolism and related MADS box-containing transcription factors  ali follow..  14  170IKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGT----------------VMLLVASVYTFATRKLQPMITSEAGKQLIQ..... 240
10 -5.090[S] KOG4556 Predicted membrane protein  ali follow..  18  1.............MSVRWLLSLLLATWTLLSI-----VFDLIGNLWVVVVFDFVQIVLLISGLF....................... 49

FFAS is supported by the NIH grant R01-GM087218-01
8 5 6 6 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.