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Query: gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQEFLGFGVVGNFAGHLEQAGESHSFINMKSEEKDAPKGLFPFYIPYENCYLGRCCIDNHKIILPSDLDLRVQAEPEIALECDVKYDEKHLVAKLVPNFFMAFNDASVRNLDAAKLSQKKNFSPASKGIGQKLPIDRFVYGGVCNNFSIASFLKYNNVWHIYGENSKLLKYEFFYQKLLDWIKDQLNHQQDGDSLEALRPFLERHNFPTKMIFAIGATPYMPFAQEHFLQKGDEVVIVAYNHLQYSFEKIQNLLEEDALQAKEHANLSYVYQIVELast
1 -8.260[Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)  ali follow..  18  98.GKIICVGV--NFPDRNEEYKDGQAAPANPS-----------LFVRFPRSFTG----HERPLMRPPESP-QLDYEGEIAIVIGKGGRRIAEKDALDHIALTLCNEGTIRRHAKFNVTQGKNF-DATGSIGPWL----VPYTDESQIADIQLTTRVNGEVRQQDRTSRMI---FSFRKIINYVSTFTTLVPGD---------VIVCGTPT----GAGARFDPPI----WLKPGDVVEVEAEGIGLLRNTIADEKV..................... 311
2 -7.990[R] COG3970 Fumarylacetoacetate (FAA) hydrolase family protein  ali follow..  15  150......LVAGSDKAAEVKKLLQELGLWSQYLEVGIGPDAIFPMSSVGCGAYIGIHPKSD------------NNPEPEVVLAVT----SKGKIVG-----ATLGNDVNLRGRSALLLSKAKDN-NASCSIGPFIRLDGAFTIEDVKQAEVSLVVDGKEGF-KMTGISPMSAISRSPEDLVSQLLNDNHQ------------------YPDGVVFFLGTMDRRGTGLGFTHEIGDRVEIST------RLGRLVNWVDHSDRCPKWSFGLGALMKNL. 386
3 -7.400[R] KOG1535 Predicted fumarylacetoacetate hydralase  ali follow..  12  107..KVVCVGM--NYVDHCKEQNVP---------------------VPTEPINFSKFANSYDEMVLPSESQEK-HIKATDAMAHVAGF--------------TAAHNVSAHDWQMRHDGKQWLLGKTFNTFYPLGL---VTKDSVADAHILKTCCQVNGEVVQSNNTNQMV---VKTEERIAWVSQFVTFYPGD-------------------VILTGTSPGVGVFRKVFLKKGDEVQCEI.................................... 290
4 -7.390[S] COG3802 Uncharacterized protein conserved in bacteria  ali follow..  16  118.LKIFRMGLEGGKPGAGKIGIQPEWFFKGVGTCVVPP---------------------GAPLPMPAFAKAGAE-EAEIVGLYLNGPDGHPYRIG-----YALGNEYSTEGENYLYLAHSK---LRSCSIGPELLI-----GDLPEEVRGHSRILRDGTVIWEQELSGEAHMSHSIANLEHFHFRYPMHRR----------------AGDLHAYFFG-AAVMSYASGIKTASGDEYEIQAQAFGKPLRNRMVSVPDEGLVT............... 328
5 -5.300[J] KOG2713 Mitochondrial tryptophanyl-tRNA synthetase  ali follow..  14  131LSTLASMGLLNRMTQWKSKSNIKQSTNGDYLVNDSDVGGLFSYPVLQAADIL----YKSTHVPVGDDQSQHLELTRHLAEKFNKMYKKTKKVLSLSPEKKMSKSDPNIFLNDEPKAIQKKIRKALTDSISDRFYYDPVERPGVSNLINIVSGIQRKSIEDVVEDVSRFNNYRDFKDYVSEVIIEELK------GPRTEFEKYINEPTYLHSVVESGMRKAREKAAKNLADIHKIM........................................ 377
6 -5.300[S] COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain  ali follow..  13  66...........AMVNGLRQAGVDVVIFDYPLGQGETPDAVFPWFSTTEAGELFLFPMACA----------NRRLEVRPEALIDTLQKQGFAVKKQHSLLAFTEQQAFLESTGVMVMDHPNRTIYA--GLSQRCDREVLEVYAEQIGYSRVVSFQT----------RLPSGSPIYHTNVMMAIGEHFCVICDEAIPEYERRFVVKSLAKDKQVISISIEQMNHFCGNILLETADGQKVIAMSQSAYEAFTLTQLNQLATHGKLLPFAVPTIETI.. 308
7 -5.180[S] COG1990 Uncharacterized conserved protein  ali follow..  16  1...............................................................................................................................................MSEYKQCIVTRDDGKFAVQVAHAALSAAEWASKSDLEWIVLRVPTIKD---LYELKEKARREGLPTALIQDAGLTE---------IPAGTVTVLGIGPAKEEVIDKVTRDLK.................... 113
8 -5.170[S] KOG3282 Uncharacterized conserved protein  ali follow..  11  68...........................................................................................................................ETELLDMLKGNSSLAALALAEGQTKMVLVVRTDGKIAAQCAHAALACYKIASAVVRIWITLQAQTEET---LELLQAQAMSLGLCARVIHDAGRTQ---------IASGSATVLGIGPGPVSVINEVTGSLK.................... 203
9 -5.000[R] COG2992 Uncharacterized FlgJ-related protein  ali follow..  65...........................................................................PDLRKYPSGTSRKKAFLRTVMPYITSQNAAITAERNWLISKQYQGQWSPAERDIAKRYKVKWATMAAAESGWGTSKLARNNNNL--FGMVKGYSQFSSVKESVSAYVTN-LNTHPAYSSFRKSRAQLRKADQEVTATMIHKLKGYSTKGKSY-----NYLFAMYQDNQRLIAAHM......................... 274
10 -4.840[S] KOG3402 Predicted membrane protein  ali follow..  16  1...................................................................................................................MNLERVSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFLVPAYTEQSQIKGYLFWVIVLTSWITIFQIYRPRWGALGDYLSFTIPLGTP................................................................... 101

FFAS is supported by the NIH grant R01-GM087218-01
8 5 6 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.