current user: public




238922464
Query: gi|238922464|ref|YP_002935977.1| hypothetical protein (EUBREC_0038) [Eubacterium rectale ATCC 33656], from E.rectale

Results of FFAS03 search in SCOP175
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .
# Score Template Links and tools%idFirst MKNELKQELTRRLCACNNGGLVLVMYDIYFGFSDDVKNALVSEDREALRKGVSDVQAALDELMGALDFKYPLAGQLYPLYSYCKRLFSTVLYSLDVSVVDETDGIMKKLRSSFETVAAGDKSAPLMDNAQKVYAGMTYGKGRLTESFINDDNRGFLALast
1 -49.800d1vh6a_ a.24.19.1 (A:) Flagellar export chaperone FliS {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  19  1...............ATPGELTLMLYNGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQELNFTLNRNIELSASMGAMYDYMYRRLVQANIKNDTGMLAEVEGYVTDFRDAWKQA......................................... 101
2 -49.100d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  13  1.RNIAEAYFQNMVETATPLEQIILLYDKAIECLERAIEIYDQVNELEKVENIDRVYDIISALKSFLDHEKEIAKNLDTIYTIILNTLVKVDKTKEE--LQKILEILKDLREAWEEVKKKVHHH.................................. 126
3 -8.200d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  16  9..................GEALPTLLEEFLNEVEK---------MLKNQVNTRRIHQLLKELDDPLLENKDLEEKLQAFLDYVK-EIPNLPEARKRYRIQKSLEMIEKLRSWF............................................ 93
4 -7.110d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase 8, USH8 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  13......KDLNKKTEVKPEKISTKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPDFKQQQDYFHSILGP-----------GNIKKAVEEAERLSESLKLRYEEAEVRKKLEEKDRQEEA.......................... 126
5 -6.700d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal domain {Aspergillus aculeatus [TaxId: 5053]}  ali model 3D-neighbors follow..  13IDTNAPNQLKFTVSRSS-CDITSIIHYG-TELQYSSQGSHIGSGLGSATVTATQSGDYIK-VTDTLTQYMVVHNGDPIIHMAT--------YITAEPSIGELRFIARLNSDLLPNEEPFGDGTAIEGSDVFLVGSETRSKFYSSERFIDDQRHCIA. 166
6 -5.890d1ay7b_ c.9.1.1 (B:) Barstar (barnase inhibitor) {Bacillus amyloliquefaciens [TaxId: 1390]}  ali model 3D-neighbors follow..  1..........................................KKAVINGEQIRSISDLHQTLKKELALPEYYGENLDALWDCLTGWVFEQSKQLTENGAESVLQVFREAKAEGCDI......................................... 84
7 -5.850d1tlta2 d.81.1.5 (A:128-267) Virulence factor MviM {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  21.........KHRSNSVGPHDLYFTLLDDYLHVVDTALWLSGGKASLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAGSQRETVQAVTDGALIDITDMREWREERGQGWQSTLEQ...................................... 138
8 -5.770d2nw8a1 a.266.1.1 (A:23-284) Tryptophan 2,3-dioxygenase {Xanthomonas campestris pv. campestris [TaxId: 340]}  ali model 3D-neighbors follow..  10  33..................HQTSELWLKLLAHELRAAIVHLQRDEVWQCRKVLARSKQVLRQLTEQWSVLETLTPS----YMGFRDVLGPSS.................................................................. 102
9 -5.710d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  35...................GYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAML----------LVPGKQLCETLEHLIREKDVPGIEKYISDIDSYVKSL................................................ 115
10 -5.480d1tu9a_ a.1.1.2 (A:) Hypothetical protein PA3967 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  12  1..NAADRVMQSYGRCCASTGFFDDFYRHFLASSPQIRAKFATTDMTAQKHLLRAGIMNLVMYARGMSDSKLRALGASH-YDLWLDALLMAVAEHDRDCDAE-------TRDAWRDV......................................... 117

FFAS is supported by the NIH grant R01-GM087218-01
6 0 5 4 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Locations of visitors to this page
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]