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Query: gi|16128007|ref|NP_414554.1|(removed signal:1-23) conserved protein, UPF0412 family (yaaI b0013 exp) [Escherichia coli str. K-12 substr. MG1655], from E.coli

Results of FFAS03 search in SCOP175
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst NDHKLLGAIAMPRNETNDLALKLPVCRIVKRIQLSADHGDLQLSGASVYFKAARSASQSLNIPSEIKEGQTTDWININSDNDNKRCVSKITFSGHTVNSSDMATLKIIGDDLast
1 -8.270d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  1.................GTELPSP-----PSVWFEAEFFHHILH-----WTPIPQQSESTCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVRA.... 80
2 -7.220d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  12  25.............................TSVYVTRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLS--TGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG.. 108
3 -7.020d1vr8a1 d.312.1.1 (A:25-154) Hypothetical protein TM1622 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  16  31......................................GDVEMKGKVAVFETEYGPVFLYVYK---GEEAKKIWKKLNGRAGFVSIRSVLDLPNMGKFSTVSNGKKIV... 97
4 -6.780d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  11  20............................ETAVVLHSDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSA........... 95
5 -6.700d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}  ali model 3D-neighbors follow..  5  1.........IVQDVPNAPKLTGITCQADKAEIH-QQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTT.... 99
6 -6.420d1tvga_ b.18.1.9 (A:) Placental protein 25, pp25 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  2.......................................DLCLSSEGSEVILATSSDEKHPPENIIDGNPETFWTTFIICFHKHVRIERLVIQSYFVQTLK.......... 70
7 -6.400d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  30............................DKSVQLSGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLT.... 111
8 -6.220d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]}  ali model 3D-neighbors follow..  14  142.............................................VMVDFRNAWTAEGHHPFPSGVED-AAVLWV---DEHRESLGLSGVVVQGESGGGNLAIATTLLAKR 205
9 -6.210d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  2.....................PLGSVKPDPPENVVARPVPSNPRRLEVTWQWPDPESFPLKFFLRYRPLILDQWQHVELSNGTAHTITDAY.................... 75
10 -6.030d2oz4a1 b.1.1.3 (A:283-366) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  17...........................................TEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLL--EDNGRSFSCSATLEVAGQLIHKNQTRELRVL... 84
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.