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Query: gi|16128007|ref|NP_414554.1|(removed signal:1-23) conserved protein, UPF0412 family (yaaI b0013 exp) [Escherichia coli str. K-12 substr. MG1655], from E.coli

Results of FFAS03 search in SCOP175
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst NDHKLLGAIAMPRNETNDLALKLPVCRIVKRIQLSADHGDLQLSGASVYFKAARSASQSLNIPSEIKEGQTTDWININSDNDNKRCVSKITFSGHTVNSSDMATLKIIGDDLast
1 -7.680d2bvya1 b.1.18.2 (A:371-464) Beta-1,4-mannanase domain 2 (postcatalytic) {Cellulomonas fimi [TaxId: 1708]}  ali model 3D-neighbors follow..  15  16........................VASAPTTVRVRVGGTDVQ----SVTVEVAQGGTVTLDLAYDGALWWTAPWSPTSAQLDNSTYTVTATATTAAGTLDVTNEV...... 94
2 -6.240d1tvga_ b.18.1.9 (A:) Placental protein 25, pp25 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  2.......................................DLCLSSEGSEVILATSSDEKHPPENIIDGNPETFWTTFIICFHKHVRIERLVIQSYFVQT............ 68
3 -6.130d1y5oa1 b.55.1.9 (A:2-115) RNA polymerase II transcription factor B 73 kDa, TFB1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  18  3............................................SGAAIFEKVSG---IIAINED-VSPAELTWRSTDGDKVHTVVLSTIDKLQATPASSEKMMLRLI... 62
4 -5.980d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  1.................GTELPSP-----PSVWFEAEF------HHILHWTPIPQQSESTCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVRAV... 81
5 -5.980d1ji1a1 b.1.18.2 (A:1-122) Maltogenic amylase, N-terminal domain N {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}  ali model 3D-neighbors follow..  10  3NDNNVEWNGLFHDQGPLFDNAPEPTSTQSVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQINDGTS.............. 99
6 -5.950d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  12......................................GRPKAKEIQLRWGLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLL-MGFGPFSEKCDITTAPG.. 97
7 -5.950d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  12.......................................EPYSSTAQVQFDEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNG. 84
8 -5.780d1ok3a1 g.18.1.1 (A:1-64) Complement decay-accelerating factor (Daf, CD55) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  1......................MQDCGLPPDVQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQW-----SDIEEFCNR....................... 64
9 -5.750d1iuaa_ g.35.1.1 (A:) HIPIP (high potential iron protein) {Thermochromatium tepidum [TaxId: 1050]}  ali model 3D-neighbors follow..  10....................................................DDPTAIALKYNQDATKSERVAAARPGLPPEEQHC-ANCQFMQANVGEGDWKGCQLFPGK 67
10 -5.750d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]}  ali model 3D-neighbors follow..  14  142.............................................VMVDFRNAWTAEGHHPFPSGVED-AAVLWV---DEHRESLGLSGVVVQGESGGGNLAIATTLLAKR 205

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.