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Query: gi|16127999|ref|NP_414546.1|(removed signal:1-23) predicted protein (yaaX b0005 exp) [Escherichia coli str. K-12 substr. MG1655], from E.coli

Results of FFAS03 search in SCOP175
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .
# Score Template Links and tools%idFirst AEITLVPSVKLQIGDRDNRGYYWDGGHWRDHGWWKQHYEWRGNRWHLHGPPPPPRHHKKAPHDHHGGHGPGKHHRLast
1 -7.350d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  30.EVSLLEGEAVEVIHKLLDG-WWVIRKDDVTGYFPSMY..................................... 65
2 -7.080d2c34a1 b.1.26.1 (A:1-113) Inhibitor of cysteine peptidases, ICP {Leishmania mexicana [TaxId: 5665]}  ali model 3D-neighbors follow..  12  12KWVDTHVGTEIHLKGNPTTGYMWT................................................... 37
3 -6.840d2nqda1 b.1.26.1 (A:3-110) Chagasin {Trypanosoma cruzi [TaxId: 5693]}  ali model 3D-neighbors follow..  25  10ATLTVAVGVEIQLPSNPTTGFAWY................................................... 35
4 -6.710d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second `additional` domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  38  23...QLWPHTKMAIGPVIDNGFYYD................................................... 43
5 -6.650d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  320.....LQAVLTHQGRSSSSGHYVSWVKRKQDEWIK........................................ 349
6 -6.600d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  15  15NTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNY..................................... 52
7 -6.560d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}  ali model 3D-neighbors follow..  21  29..EDMIPTVGFNMRKITKGNKLWDGGQPRFRSMWERYCR.................................... 69
8 -6.150d1iyca_ g.31.1.2 (A:) Antifungal peptide scarabaecin {Beetle (Oryctes rhinoceros) [TaxId: 72550]}  ali model 3D-neighbors follow..  30  1.ELPKLPDDKVLIRSRSNKGKVWNGFDCKSP............................................ 32
9 -6.140d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}  ali model 3D-neighbors follow..  17  26..VTTIPTIGFNVETVEYKNTVWDGGQDKIRPLWRHYFQNTQG................................ 70
10 -5.800d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]}  ali model 3D-neighbors follow..  20  44..FRLEAGASLKIGAPAADGVHCYGDCTITNVIWED....................................... 80

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Liu T, Rojas A, Ye Y, Godzik A. Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family. Protein Sci. 2003 Sep;12(9):1872-81.