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anford Burnham Prebys Medical Discovery Institute

Query: gi|16127999|ref|NP_414546.1|(removed signal:1-23) predicted protein (yaaX b0005 exp) [Escherichia coli str. K-12 substr. MG1655], from E.coli

Results of FFAS03 search in SCOP206
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AEITLVPSVKLQIGDRDNRGYYWDGGHWRDHGWWKQHYEWRGNRWHLHGPPPPPRHHKKAPHDHHGGHGPGKHHRLast
1 -7.180d4j9fa_ b.34.2.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  20NTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNY..................................... 57
2 -7.160d2c34a1 b.1.26.1 (A:1-113) Inhibitor of cysteine peptidases, ICP {Trypanosome (Leishmania mexicana) [TaxId: 5665]}  ali model 3D-neighbors follow..  12  12KWVDTHVGTEIHLKGNPTTGYMWT................................................... 37
3 -6.860d2nqda_ b.1.26.1 (A:) Chagasin {Trypanosoma cruzi [TaxId: 5693]}  ali model 3D-neighbors follow..  25  11ATLTVAVGVEIQLPSNPTTGFAWY................................................... 36
4 -6.640d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  30.EVSLLEGEAVEVIHKLLDG-WWVIRKDDVTGYFPSMY..................................... 65
5 -6.620d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second `additional` domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  38  23...QLWPHTKMAIGPVIDNGFYYD................................................... 43
6 -6.570d1zd9a1 c.37.1.8 (A:17-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}  ali model 3D-neighbors follow..  21  29.NEDMIPTVGFNMRKITKGNKLWDGGQPRFRSMWERYCR.................................... 70
7 -6.410d1iyca_ g.31.1.2 (A:) Antifungal peptide scarabaecin {Beetle (Oryctes rhinoceros) [TaxId: 72550]}  ali model 3D-neighbors follow..  30  1.ELPKLPDDKVLIRSRSNKGKVWNGFDCKSP............................................ 32
8 -6.100d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  320.....LQAVLTHQGRSSSSGHYVSWVKRKQDEWIK........................................ 349
9 -5.900d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]}  ali model 3D-neighbors follow..  19  42PIFRLEAGASLKIGAPAADGVHCYGDCTITNVIWED....................................... 80
10 -5.880d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}  ali model 3D-neighbors follow..  17  26..VTTIPTIGFNVETVEYKNTVWDGGQDKIRPLWRHYFQNTQG................................ 70
FFAS is supported by the NIH grant R01-GM087218-01
9 5 7 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;