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Query: gi|16128007|ref|NP_414554.1|(removed signal:1-23) conserved protein, UPF0412 family (yaaI b0013 exp) [Escherichia coli str. K-12 substr. MG1655], from E.coli

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst NDHKLLGAIAMPRNETNDLALKLPVCRIVKRIQLSADHGDLQLSGASVYFKAARSASQSLNIPSEIKEGQTTDWININSDNDNKRCVSKITFSGHTVNSSDMATLKIIGDDLast
1 -6.040[R] COG4455 Protein of avirulence locus involved in temperature-dependent protein secretion  ali follow..  15  193............................WKPVNITLVNGDTHGAWLFTRYSGSESASDALRL------CRETAWQDGPGET-GQKVMAHCTFHAQENDGA........... 274
2 -5.720[C] COG3052 Citrate lyase, gamma subunit  ali follow..  11  2..............................KINQLAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGEAIRATILEVLSRYDVRGVQLNVDDKGA............ 70
3 -4.570[S] COG4743 Predicted membrane protein  ali follow..  10  195..................VIGNPREGESFTEFYILGPEGMAE-DSGIVVVGITNHEHRTVNYTMELRLENRSLSLPENQEYDNVSWKEPVTFTPTLEGKNMKLEFLLFNDT 299
4 -4.430[R] KOG3358 Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains  ali follow..  14  28.............................SVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVIKCGQPIRLTHVNTG-------RNLHSHHFTSPLSGNQEVSAFGEE 124
5 -4.390[D] COG0851 Septum formation topological specificity factor  ali follow..  47...............................LEVICKYVQIDPEMVTVQLEQKDGDISILELNVTLPEAEESK...................................... 88
6 -4.310[O] KOG1730 Thioredoxin-like protein  ali follow..  12  67..........VESDADEELLFNIPFTGKLKGIIIMGEDDDSHPSEMRLYKNIPQDDTEREPDQTFSLNRDLTGELEYATKISRFSNVYHLSIHISKNFGADTTKVFYIG.. 170
7 -4.200[P] COG3470 Uncharacterized protein probably involved in high-affinity Fe2+ transport  ali follow..  14  22.GEVPIGDPKELNGMEIAAVYLQPIEMEPRGIDLAASLADIHLE-ADIHALKNNPNGFPLTIAYELKNTDTGAIKR--VADDGPHYGANIAMEKDKKGGFGVGNYEL.... 137
8 -3.970[T] KOG4458 Nitric oxide synthase-binding protein, contains PTB domain  ali follow..  14  37.....VGSLDVPRPNSRVEI-----VAAMRRIRYEFKAKNIKKKKVSIMV-----SVDGVKVILKKKKKLLLLQKKEWTWDESKMLVMQDPIYRIFYVSHDSQDLKIFS.. 130
9 -3.880[R] COG2085 Predicted dinucleotide-binding enzymes  ali follow..  66.................DIVFLAVPLHKFRSVNPATLEGKIVIDTMN-HWVPVNGELEE------IDQDPRSTSEIIAEFFAGSTMVKHIGYHEIEQDAGTGRAIAYATDD 155
10 -3.830[T] KOG3739 Stress-activated MAP kinase-interacting protein, Sin1p  ali follow..  363.......DVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDSDLLCACDLAEEKSPSHAIFKLTYLSNHDYKHLYFESDATVNEIVLKVNYILESRASTARAD....... 460

FFAS is supported by the NIH grant R01-GM087218-01
1 0 9 0 2 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jaroszewski L, Ye Y, Godzik A. The interplay of fold recognition and experimental structure determination in structural genomics. Curr Opin Struct Biol. 2004 Jun;14(3):307-12.