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Query: IDP00014 Protein recA (Recombinase A) BA_3915 [Bacillus anthracis str. Ames], from CSGID

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERKVSTVSSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIREHHGISEDSGAEGMEDPNLLDLast
1 -129.000PF00154.19; RECA_ACIAD/7-268; recA bacterial DNA recombination protein  ali follow..  67  1.....KALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSETKVKVVKNKMAPPFREAIFQILYGKGVN............................................................................ 262
2 -27.600PF13479.4; F5YIK8_TREPZ/11-202; AAA domain  ali follow..  18  5...........................................................CALFGPSGSGKTMTALRAKGIADTMGVPFAVIDTEARSASKYADRIPFDVDDLDGKTVDHYIAAMNECV----KAGYKVLVIDSLSELTDEVDRIAQSSVSKNTFSPAKVNPKQKRFIDAILNFPGHIIATMRSKTVAPEKMGLAPEQGKGIEYEFDLLMELDQKHQATVTK................................................................................................................ 189
3 -22.300PF03846.12; SULA_PECAS/8-119; Cell division inhibitor SulA  ali follow..  16  3...................................NIESSSFSANQHAAEPSVATGGIISEIYNADQPIVTHLLLPLLQQLGTQSRWLLWLSPQQRLSRPWVQQSGLPLDKMVQLHHINPLFTVDAMERALLTGNYSAVLC.......................................................................................................................................................................................................... 109
4 -22.200PF08423.9; W1Q8L5_OGAPD/106-359; Rad51  ali follow..  21  11.............................QRRSELICLTTGSKQLDTLLG-GGIETGAITEVFGEFRTGKSQLCHTLAVTCQ-GEGKCLYIDTEGTFRPIIARRFGLDLDNVAYARAYNADHQLQLAASMMTESRFSLLIVDSIMALY-RTDYSGR---GELSARQMHVAKFMRTLQRLADEFGIAVVITNQVVAQVDIFNPDPKKPIGGNIVAHSSTTRLYFKRICKIYDSPCLAESETVFALGQGGVIDP........................................................................................... 254
5 -18.900PF06745.11; O29463_ARCFU/20-274; KaiC  ali follow..  14  1........................IPTGTKLDELFYKVEKEGDRYVRKPL-GGIPHLAVMNITGVPDTGKSLLAEQFAITQAGSGYRVLYVTVESPANFLRSEAMGVDFTKVE-ELRENPKALMETMAYAIKEKKVTNTIIDSITGLYEHKEMM--------------ARQIVRQFFNFMKKYRQTGIFVSQKRSA-----SESAEAAGGLAVAHIVDGTIVLDKKLDVSLYGLPLGSILRIRIDGCRIAPHDSRVWVFEISEIGTIEIIAPLS..................................................................... 255
6 -10.100PF07088.9; GVPD1_HALSA/23-536; GvpD gas vesicle protein  ali follow..  13  9.......................................................AGETLLINGAPGTGKTLFTIRGLDVLDR-DSDVLYVSTRVDQETVHEMYFADHLDVDVPFEKLDLDSLLEWIQEINAATTQLTIAFDSWELIYEYLAVRHD--------DPPDIKTVTNQLAVLAREENIRLMLVTETAAPSSLEY----IVDGVVTLQVKEDDRGRTRRLRLDKLRGVRIGNRLQPFTLADQVITPVELLDLDRILSGGYNR-GSVVHLDLGPDL.............................................................. 269
7 -9.050PF09445.8; Q6CRW0_KLULA/100-266; RNA cap guanine-N2 methyltransferase  ali follow..  21  1........................................GNCIVDVFCGGGGNT--LFEKVYGIDSNIDHLYCAYKNAECYNSAVKLKLIDWEESLKKTLVKNLGKTPDCIFASPPWGGQDTYDLEEHLQPSPLSKILVCQNVVLFLPR------------NSDLDQLSSITHDLLGPDEKCKVVYVKDNGYMKGILAFWGRP........................................................................................................................................... 167
8 -8.170PF01695.15; Y4IQ_RHISN/60-238; IstB-like ATP binding protein  ali follow..  19  37.............................................AIAAGDSWLAKGANILLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTD-----------------LVQKLQVARRELQLESAIAKLDKFDLLILDDLAYV--------TKDQAETSVLFELISARYER--------RSIMITANQPFGEWNRVFPDPAMTLA...................................................................................................................................... 167
9 -7.790PF13481.4; B2JV40_BURP8/220-401; AAA domain  ali follow..  14  25...................................................DVIPAHAVGAVWGASAAAKSFLVLDLAAALTEEPVPVLLVSLEGNNG-AWEKHNGRPVPARLHTLTQDPRDTDDLCEAIETCGIGGVVFIDPFALATIGLE-ENSSAD---------MGRAGAALNTLRERTGCTVIAVHHTGK.................................................................................................................................................... 179
10 -7.540PF04665.10; Q6TUP8_YMTV5/6-246; Poxvirus A32 protein  ali follow..  11  16...........................................................IALVGGSGSGKTAYLLSLFNTFVEKYRHIFLFTPV--YNSEYDSYIWPDHVNRVTTYEELDYSLITTKQKIEKTTEMFLLILDDMGDKQIRSSCLLDF-GRHLNTSIILLCQTYKHVPVNGRTSITHFCCCNVSDSDIENML.............................................................................................................................................. 166

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.